RNA id: XM_034300793.1


Basic Information

Item Value
RNA id XM_034300793.1
length 3352
RNA type mRNA
GC content 0.39
exon number 35
gene id sycp1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13467442 ~ 13490077 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCTGTCAATGTGCAGTATCGTTAAATGTTCTCTATTAGAAACCTGAATTCGCTTCAAATCGCCTCGTGCTGTATTTCAGCCCGCACGCGCATCAAAAGTATAAAGTCGGTTAGAAAACCGTTAGGACTTTTCTTACTGAGCTGCGCACAGAGAGAAGAAGACTGATAAGTGGGTAATTAAGCAAGTAAGTCTGTCAAACCGTGATTTAAAAGCATGGAAAGAGCATTTAACTTTAAACTTTTAGTTCCTCCAAGAACCAGGCTAGGTCAGGTGTCAGCCGTAAAGCCTCAAGATCCTGGGCTGTTTGAAGATGACAGTAGCTTTACAGTACCAGTTCAGagttttaataaatgttttgaaaaagaGACCATTTCAAATACCAAGATGGTGTTGCCTACAGAGTCCCCAAAATCAGAGTTCACAAAGAGGATTGCTGTGATGCCAATAGAGAAAGAAGAGCCACCGTTAAGATCCAGTCAGTTGTATTCCAAACTGTTTGAAgaggctgaaaaaataaaagcttggaAATTGAAAATGGACTATGATATCTCACAAAAAGATAGAAAGCTTCAGGAGAATAGAAGGACAGTTGAGACACAGCGCAAAGCCATTCAAGAACTTCAGTTTGAAAATGAGAGTCTGAGCATGAAATTAGAGAAGCAACTAAATGAAAACGAAGAAATGAGGAATAAAAGTAATGCAACAAGAAATTTGTGCAACATTCTGAAGGACACTTTTGAAAGATCTACTGAGAAAATGAGCCTGTTtgaggcagaaagagaagaaacCCATGGTCTCTTCTTGCAGAACCACGAAAACATTCAGAGGATGGCTGCTGCATTTGAAACTCTCCGGCTGCAAGCAGAGGCTGACCAGCTAGAAATGTTAAAAGCTAAGGAAGGCCTTAAACAGTTTGAGGACCTTAAAGTGAGATTTGAGAATGAGTATCGCATGAAGGAAGAGAAGgtttCCCTGCTTGAAGAAAAACTAAGAGAAAAGGAAAGTCAGCTTACAGAAATTTTACTCAAACTCCAAGAGACTCAGAAAAACTTCAGTCAACTCCAGGAATCTGCAAACCAGCATCTTGAATTACTTCACAACTGTAAACAAGAACAGGATGAACTGCAGGAAAAACTGGAAAGAGAAGAACAACTCAGGCAGGAGAGTGAGAAAAACCAGAAATCATTAGTTAACACACTTGAACAAACCAAAGAGATGTATGTAAAGAACCTTCTGGAGAAAGATATCGAGCTTAaagatataaataatatcaaagaGCAACTGACACACCAAATTGAAGAGATGCAAGTGACAGCAGATTCCTTACAGTCCTCTTTAAAATTGGAGAAAAAGCGGGTTCAAGAACTTGAATCAGAGCTTAGCTCAATATCTGAGGAACTCTGCAGCAAAAAAACAGAACTAGGAATATTAAGAGAAGTGAAAGTGGAGTGTGACAGCCAAATACAAGCTCTGAAATTTGAAATGGAGACAAAGGAAAATACCCTAAagtcttttgaggaaaagataAAAGCAGATGAAGAACAGATTCTTCAGCTGACTTCAGAACATGaggaaaaacaagcagaaataaacaaattgaaGGAAAAATTGGAGATTGCCGcagtggaaaacaaaaaaatggtggCTACCCTGGAAGAGGCTGTAAATGAGCAAACGCTATTGAAGGAGCATTATCTTTTGAAAGAGGTCAAACTGCAAGAGATTGAGGGGCAGTTATCAGAAGCACTGAAGAAAGAGAGCGAATCATCTAATAATATTAAAAGATTGCAAATGGATATCAGTCAATACAAGGATAGATATGATGATCTACTAGAGAGATTTAATCAGCTTCTTCTTCAAAAGAACACTGTACAAGAAGAGGACAGTGATCCAAAGGCCAAGGAAATTAAAGAAActgaggaaaaaatgaaaattgaagTAGGGAAACTTGAGgtggaaaaacaacaactacaAAAGCAGTTGGAGGTACTAAATGCAAAAATTGAGGAGCAACATCAAGAGAATGAGAATATTCAGAAACTGTTAAAAATCTCAAATAAAAGCTCACAGAATCGACTGATGAAGAAGGAAAGACAAGTCAAAGCACTGGAACTAAAGTtaacaaatctaaaaacaaaactggAGGCCAAAGCCAAGACTCAGGATGAAAATCTGAAAGAAatAGCCATATTAAAAGAAGAGTCCCAAAGCCTGAAACACCACCACGAGGAAGAGTATAAGAGAATATGTTCTGAGCTGGAAAACAAATCAGCCTCTGAGGCTGAGCTTACACTGGAGGTGCAGAAATGGAAGCAAACATCAGTGGAAGCAACAAAGAGCAAGGAAGACACTGCAATCAAATTCCAGCAGAAGATAGCTGACATGGTTGCTCTGATGGAAAGGCATAAGCATGAGTATGACAAAATGGTGGAAGAGAAGGATGCAGAACTGAATGAGAAAAGAATCCGAGAAGCTGAAGTTAATGCTAATAAAACTTctgtgGAACTGGAGCTATCCCACCTGCAGGTTGAAAATGTACAATTAAAACAGCAACTTGATGAAATCAAAATGGAAAAGGAAAACCTGCAGCAGCAAGTGGAAGAACTTAACAAGATGCAGACATCTCAGAAGGACatttacaaaaagaaagagGAGTGTCTAGAGCAAGAAATGATTACCTTAAAGAAGCAAATTAAATCTCTTGAAAAAGACAAGACTCAAAAGTTGTCTGAGACTGCTTCCAAAAATGACAAAGGCTCTGAAACTCCAGATGTTGCTCCCATCAAGAAATCAACCCCTGCATTTTCAAAGAAGAAAGGAATAGAAACTCCGTCAAGAAAAGATCCAGCAACACCTTTTAGATTAGATGACAGTCTTAAAACACCATCTTGGACTTTGGGAACAAACACAGGAACAACATCTCGAATAAGGTCTTTCAGAATACGCACACCACCTTCAACAGAGAAATCAGCACTATGGAAGAAAAACACCCTGGAGCTGGATCCTAAATCTGACAGCTCAGAGCAAAATGATGTACTGAGTTTCTCTACCATCATTAACAAGCAAAGAATGGACTCTGGAACAGAGTGCCTGGGCTTATTCAAGAAGGTACAAAGTTCTGTTGTTTATAAGTCTCCAGGGGCAGCATTAAAACTGGCAGCCATGAAGAGGATGCGGGATGCAGGTTGGACTACCATTACCAGTTcagacaagaaaaagaaaaaagtcactgaaaaaatatttgcttAACCACTTTTGCATTGTCAAACTTAATCACTTAGACACTAGACTTGTTACTGGTTCTcctgttcattttaatttgagaatatattagataatatttataaagg

Function

GO: NA

KEGG:

id description
K19533 SYCP1; synaptonemal complex protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403407.2 lncRNA upstream 92946 13351846 ~ 13374496 (+) False LOC113533310
XR_003403408.2 lncRNA upstream 93632 13351846 ~ 13373810 (+) True LOC113533310
XR_003403409.2 lncRNA upstream 93632 13351846 ~ 13373810 (+) False LOC113533310
TU31025 lncRNA upstream 559348 12855396 ~ 12908094 (+) True G26266
TU30985 lncRNA upstream 667588 12799618 ~ 12799854 (+) True G26233
TU31582 lncRNA downstream 84 13490161 ~ 13497729 (+) False tshba
TU31688 lncRNA downstream 136404 13626481 ~ 13629466 (+) True G26848
TU31730 lncRNA downstream 332307 13822384 ~ 13825226 (+) True G26873
TU31732 lncRNA downstream 344162 13834239 ~ 13836347 (+) True G26875
TU31741 lncRNA downstream 383238 13873315 ~ 13873523 (+) True G26884
XM_026929119.2 mRNA upstream 1121 13456562 ~ 13466321 (+) True LOC113535652
XM_026941676.2 mRNA upstream 19313 13441193 ~ 13448129 (+) True LOC113543455
XM_026924017.2 mRNA upstream 135265 13265788 ~ 13332177 (+) True si:dkey-238f9.1
XM_026924026.2 mRNA upstream 135265 13296992 ~ 13332177 (+) False si:dkey-238f9.1
XM_026922691.2 mRNA upstream 252879 13200052 ~ 13214563 (+) True mov10a
XM_026921646.2 mRNA downstream 5778 13495855 ~ 13506004 (+) False tshba
XM_026921620.2 mRNA downstream 6096 13496173 ~ 13506004 (+) False tshba
XM_026921662.2 mRNA downstream 8856 13498933 ~ 13506004 (+) False tshba
XM_026921637.2 mRNA downstream 12130 13502207 ~ 13506004 (+) False tshba
XM_026921629.2 mRNA downstream 12269 13502346 ~ 13506004 (+) True tshba
TU31442 other upstream 135574 13266027 ~ 13331868 (+) False si:dkey-238f9.1
TU30617 other upstream 939951 12526170 ~ 12527491 (+) True G25908
TU30526 other upstream 1260185 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU29627 other upstream 2558870 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 2712820 10754515 ~ 10754622 (+) True LOC113537259
XR_004577014.1 other downstream 5779 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 5780 13495857 ~ 13499365 (+) False tshba
XR_004577011.1 other downstream 5780 13495857 ~ 13499365 (+) False tshba
XR_004577010.1 other downstream 6005 13496082 ~ 13499365 (+) False tshba
XR_004577013.1 other downstream 6077 13496154 ~ 13499365 (+) False tshba

Expression Profile