RNA id: XM_034310990.1


Basic Information

Item Value
RNA id XM_034310990.1
length 1498
RNA type mRNA
GC content 0.46
exon number 12
gene id prkag1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13695082 ~ 13704328 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGATTGCTGTACTGACCTGCGCTGTGTCGTCATTTCCGGTTGCCGCTCCACTCTGAGCAGAGCAGAGGTGAGTCCGGGAGCTGGGTGTTTTCAGAAGAACACCGTGTATGGACcatggagtgtGTTCCTGCTGTTGTTGATGAATTTGAGTGTAAAAAGGAGGCACACATAGATGaTCCTGACCGCAATGCGTACACTCGCTTTATGAAGTCTCACCGCTGCTATGACCTGGTGCCAACTAGCTCCAAATTGGTGGTGTTTGACACCTCTCTGCAGGTGAAAAAGGCTTTCTTTGCTCTTGTCTCCAATGGAGTGAGAGCGGCTCCACTCTGGGACAGCAAGAAGCAGTGCTTTGTTGGTAAGCGGCTTATACAGCATGTACAATTAGTCATCATGAATTCATTTCCCTTTCTGCTACATtctaattatacatttattataggCATGTTGACCATAACAGACTTTATCAACATACTTCATCGCTACTACAAGTCACCGATGGTTCAAATATATGAGTTGGAAGAACACAAAATAGAGACATGGAGAGAGGTCTATCTACAGGATTCCTTCAAACCTCTTGTTAGCATATCACCTAATGCCAGTCTGTATGATGCTGTGTCATCTCTGCTGAAGCACAAGATCCACAGGTTGCCAGTAATTGATCCTCTGACAGGGAACACGCTGTACATCCTTACTCACAAGAGGATCCTCAAGTTCCTCAAACTCTTTATTTCAGAGATGCCCAAGCCAGCATTCCTATCAAAGTCTCTCGAAGAACTCAACATCGGAACATTCCAGAACATTGCCATGGTCCACGCTGACACACCCCTCTACACGGCGTTGGGACTCTTCGTCGACCAGAGGGTGTCTGCCCTGCCTGTAATCGATGATAATGGAAGGGTGGTTGACATATACTCCAAGTTTGACGTCATAAACCTGGCTGCGGAAAAGACGTACAACAACCTGGACATTACTGTCACAAAAGCCCTTCAGCATCGCTCTCAGTACTTTGAGGGAGTTCTCACCTGTCAAGCACATGAGACACTGGAGGCCATCATCAACAGACTGGTGGAGGCAGAgGTGCACAGATTAGTGATGATAGATGATCATGAGGTGGTGAAGGGCATCGTTTCTCTCTCAGATATTCTTCAGGCTCTGGTGCTCACCAGTGGAGACAATGGCTCTGCTTGAGAGgtgagaagagaggaagaggggAGACGAGAGAGAGGTGGTTGCTGAGAAATTGGAGCTAACAAAGCAAAGCGATGTAAGCCAGCCGATGGACCTTCAAAGGCcaatcacaaaaaaagaatCAGCAAGGAGTCATCTAATCTTAGCTTgtagagtgaaaagaaaaatctccCACAAGCCTGTCCTCTTAAGTAATGATAAAATCcagattattttataatttgacATAACAGAACCTGTTTTatgtctagaaaaaaaaaagatgagccctcccttcttctcttcctctttctctcgaGGGAGAGT

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0030554 adenyl nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K07200 PRKAG; 5'-AMP-activated protein kinase, regulatory gamma subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31688 lncRNA upstream 65616 13626481 ~ 13629466 (+) True G26848
TU31569 lncRNA upstream 177679 13434904 ~ 13517403 (+) True G26749
TU31582 lncRNA upstream 197353 13490161 ~ 13497729 (+) False tshba
XR_003403408.2 lncRNA upstream 321272 13351846 ~ 13373810 (+) True LOC113533310
TU31730 lncRNA downstream 118056 13822384 ~ 13825226 (+) True G26873
TU31732 lncRNA downstream 129911 13834239 ~ 13836347 (+) True G26875
TU31741 lncRNA downstream 168987 13873315 ~ 13873523 (+) True G26884
TU31779 lncRNA downstream 296603 14000931 ~ 14054690 (+) True G26921
TU32056 lncRNA downstream 465452 14169780 ~ 14172077 (+) True G27164
XM_026925313.2 mRNA upstream 534 13686081 ~ 13694548 (+) True pa2g4a
XM_026915303.2 mRNA upstream 9545 13661845 ~ 13685537 (+) True erbb3a
XM_026915311.2 mRNA upstream 9545 13661845 ~ 13685537 (+) False erbb3a
XM_026917303.2 mRNA upstream 36410 13651393 ~ 13658672 (+) True arf3b
XM_026917295.2 mRNA upstream 36410 13651404 ~ 13658672 (+) False arf3b
XM_026912846.2 mRNA downstream 41686 13746014 ~ 13821483 (+) True plxnb1b
XM_026912864.2 mRNA downstream 41686 13746014 ~ 13821483 (+) False plxnb1b
XM_026912873.2 mRNA downstream 41686 13746014 ~ 13821483 (+) False plxnb1b
XM_034311898.1 mRNA downstream 41686 13746014 ~ 13817893 (+) False plxnb1b
XM_026912854.2 mRNA downstream 51489 13755817 ~ 13821483 (+) False plxnb1b
XR_004577012.1 other upstream 193786 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 195717 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1487256 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1574499 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2476990 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 5070442 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 5113074 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile