RNA id: XM_034311038.1


Basic Information

Item Value
RNA id XM_034311038.1
length 2084
RNA type mRNA
GC content 0.43
exon number 6
gene id si:ch211-201h21.5
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20258821 ~ 20265493 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGGCATTTTAAGGCTTTATTCACCTAGTGGACTGTAGTGGCTAGTACgcgatttgggacgcagccggTTAAACGGTCACTGACCTTAGTGCTCTGGGAAAGGACGAAGCAGCACGCGCTCATGAATTATTCATGAATTTCTTTCTAATCCGAAGTTGTTTTGGACGTCGCTCATCTCACTTTGCTGGAAGTTTTTGCTTAGACCAGCTGCACTTGGACGCACCAAAATCACCGCCCAACCTGCTCATTTAGGTAACCATTATGAGTCAGAAGCTGATGATTATCGACACTGACTGCGGCATAGACGATGCACAGGCTATAATGCTGGCTCTCGGCTCATCCAATGTGAAGATCCTGGGCATCACCTGCTGCTTTGGAAACACTGATGTAGACAATGTGTGTCAGAATGTGCTGCGTGTACTGCGTGTGTGTCAGCAAACTCAGATTCCTGTCTTTCGAGGGGCGGCCAGCTGTCTGGTTGGAGCAACAAACCCATTCAAAGATCATTTCGGGACAGATGGCTTAGGAGAcgttcttcaggacagagactCAGACACTtggaaaacacaaatacagaaagAGCATGCAGTTAATTCTTTGATCAGATTGGTGAATGAGCATCCAGGGCAGGTCTCTCTTGTTGCTCTGGGTCCACTCACGAATTTAGCTCTCGCTGTTAGAGTGGATCCCTGCATTCCCCAGAAGCTGAAGGATTTGTACATCATGGGAGGCAACATGGAAGGTAGAGGGAATCTGATGCCATGTGCAGAGTTTAATTTCTGTATGGATCCCGAGTCTGCCTACATAGTCTTAGAGGAATATGTGTGTCCCACACACATAGCCACCTGGGAGTTTACCTGCAGAAACAAGCTCTCTTGGGAGTTCTTTGATGAGCTGACTGCCCAGGACAGTGCAGCTGCTCGTTTTATGAAGATGATCACCTCTAAATGTTGGGCTTTCTCCAAGGAGCCTGGAAATAATGCAAAGGATGTACTTTTCGGGTCAGGGTTCGTGCCCTATGATGCCTATGCTGTGGCAGCATGTGTGGATGGCAGCGTGATCACAGAAAGTGTGGAGTGTGGTGTTCGCGTGGAGATCCAGGGAGAGCTCGGCCGAGGCATGATGGCACTGGATTTCACTGGCAAGCTGAAGAGTCATCGGGTGTTTGTGATGAAGACCTGCAACCTCACCAAGTTCAGCTCCATGCTCATGGCTTCCTTACAGCAACCGTGAGGAGTTAGAGCAGAGATAGTTGAGTGGGCGAAGGTTTCATATTCTACTCAtccattttggattttaaagaaaaagcttAAGAGGTCCTCTGATTAGCCTCATTTCACCTTCTGGACTGTTTAGGCATTTCTAAATTAGTATGAATTTATAGGACATCAGTAAGCACACAACTCTAGTGCCAAGCTGCCacaatcaaaacaaatccatttatgtttgtgtagtgttgtgtttgTAGGTTTCACACCTCAGCAATTgagaatggaaaatggaaatattATATTGCTCCATATGCATTTTCTGATAGTATGAAGTAGGAAGTATGAAGTCCGATAGCAGGGCCAGCCTCTCCGGAGCTGTAGCTGGTTTATGGCCTTCATCATGGAACCAGCTGTGTTAGAGGGAAGTGTTGATGCTAGTATATAGGGATACAATCAGgccatttgaaatttgaatttgatttctAATCAAACCGATTGTCTCAGTCTTTAGcccacacacattatacacaattTTTCTTTCCAGTCATATTTGTACAATGTGTTGTATTGTCTGCAGCCATGGTTTAAGATATATTAACAAAACTCAgaattgtatgtatgtgttataGAAATTACAAGTGTATATGCATCttataaaaataagaagaaaaaaaaagaacaacccAGTAAATATTGCTGCCTGATATGTTTATTTCATCCAACATAACGGATTTCTCACTCATGGTGACAAATGAACCATGTAGAAAACAAACCCCTTTCAACTCATTttgacattaaattaaaaaccaaTTTTTAGCAAATAAACCTTTCTTTAACCAGAatccaataaaaataataagttaaACCTCAAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35863 lncRNA upstream 24049 20233975 ~ 20234772 (+) True G30382
TU35759 lncRNA upstream 218847 20037735 ~ 20039974 (+) False G30288
TU35929 lncRNA downstream 68250 20333743 ~ 20334121 (+) True G30436
TU35935 lncRNA downstream 95097 20360590 ~ 20361838 (+) True G30442
TU35938 lncRNA downstream 102320 20367813 ~ 20368152 (+) True G30445
TU35941 lncRNA downstream 107213 20372706 ~ 20373062 (+) True G30448
TU35948 lncRNA downstream 115277 20380770 ~ 20380982 (+) True G30455
XM_026926725.2 mRNA upstream 9363 20245981 ~ 20249458 (+) True zgc:172121
XM_034311045.1 mRNA upstream 9460 20245574 ~ 20249361 (+) False zgc:172121
XM_026923907.2 mRNA upstream 51068 20199525 ~ 20207753 (+) True atp1b1a
XM_026921295.2 mRNA upstream 146302 20104204 ~ 20112519 (+) True rpl5b
XM_034310260.1 mRNA upstream 238595 20000046 ~ 20020226 (+) True LOC113543059
XM_026927129.2 mRNA downstream 49532 20315025 ~ 20324579 (+) True actl6a
XM_026942739.2 mRNA downstream 63950 20329443 ~ 20333691 (+) True ndufb5
XM_026917400.2 mRNA downstream 70138 20335631 ~ 20359651 (+) False usp13
XM_026917375.2 mRNA downstream 70139 20335632 ~ 20359651 (+) False usp13
XM_026917393.2 mRNA downstream 70139 20335632 ~ 20359651 (+) False usp13
XR_003403752.1 other upstream 148596 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 721807 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1431901 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1441346 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4076518 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 749365 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 2332848 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 3210458 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3754885 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 4387497 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile