RNA id: XM_034311050.1


Basic Information

Item Value
RNA id XM_034311050.1
length 1616
RNA type mRNA
GC content 0.44
exon number 1
gene id trim63a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26530903 ~ 26532518 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGGACCAGTAGATCAAAATAAACCTTGACaagaacagaaacacacaggagAGCTTTACACTCACGGAAGCTAGGATCCAGCGCAAAGAAAAAAGGACTGAGGATACGTATAGACATGGACATTCAGACAGGCCAAGTAGTGAGGGCCGTAGGTCCTATGGAGAGCCTGGAGAAGCAGCTGAGCTGCCCCATCTGCCTGGATATGTTCACCAAGCCGGTGGTCATCCTTCCCTGCCAGCATAATCTATGCCGTGGCTGCGCTAATGACCTCTACGACTCTCGTAACCCCTACCACTTCTCAGGAGGAATCTTCCGCTGCCCAACCTGCCGCTTTGAGGTGGTGCTGGACCGCCATGGTGTCTATGGGCTTCAGAGAAATCTCCTTGTAGAGAACATAATTGACATCTACAAGCAACAACAGGAGAACAgcggtggtggtgatggtggccTGGAGCCTCCTTTGAAGGCCAAGGATACAAAAGAGCAAATGTGCCAGGAACATGCAGACGAGCGCATCAACATCTATTGTATTTCCTGCCAGGTCCCTACATGCTCCATGTGCAAGGTGTTTGGCCAGCACAAGGACTGCAAAGTATCCACCCTGAAGAGCGTCTATGAAAACCAAAAGGCTGAGCTCCAAAACTCAACTGAGTTGCTTGCAGCTAGCAACAGCTGTGTGCAGGCCATGCTAGTGCAAATGGAGGACATCTGCAAAGCTGTGGAGGAGAACAGCCAACTACAGAAGCAGAGACTGGGAGAGAAGTTTGACTTACTCTATGCAGTCCTGGAAGAGCGTAAGGCCCAGCTGCTGGAGCAGATCACACAGGAGCAGGATGAGAAGGTAGCAGTGGTGCAATCGCTAATTCAGCAGTACAAAGAACGGTTGGAAGCTAGCAGTAAGCTGATGGACCAAGCCACGCAAAGTTTGGACAACAGCAGCATAGCTGAGTTCCTCATCAATGCCAAGAAGCTCATTGCAGAAGCCAAGGACACAGCCAAAAACTCCCAATTACAAAGGCCAGAACTTGGCTTTGAGAAGATGGACCACCTCACACTGTTTACTGAAGAAGTAGAGGCCATTCTTGCAAAAATTGACTTTGGtgcagatgatgatgaggaggaagaagaggaggaattTGAAGAggcagaagaggaagaagaggagtaAGCAATAGTAATGAAGAACTTTGTTTGATACAAAGACGTTTTATGGAGAAAGGGtagatgaagaaataaaaagagccCTGGTTAGCACAGGAACACAAAATAGCTGCTTTtgaaaactgtgatgagtgtgtgcaatcttaaaagcagttttttttacataacaaattGCACCATTTCCACTTTCCACTTGACTTTTATACTTTTGTATTTATATGaatgttcatatttaattatttctgttatctttagTGTAGATGACAAGGTTTACACCTGAATATTAGATTTGATAGGATTGTTAAGTCAAAACTAGATTTGCTAGCTGTAGAATACAGCTGTTAAAATTTAGTTTTAGTGTGTATGTCAAAATGTTTGAATACTTGAAATGATGCAGTTGACTCATGAACTACTGTAAAAGTTTATTTTCATTGGATAATTCAATGGGAATAAA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39362 lncRNA upstream 119447 26411256 ~ 26411456 (+) True G33410
TU39342 lncRNA upstream 122507 26337243 ~ 26408396 (+) False agap1
TU39349 lncRNA upstream 213116 26313015 ~ 26317787 (+) True G33397
TU39346 lncRNA upstream 226159 26298996 ~ 26304744 (+) True G33395
TU39326 lncRNA upstream 232121 26243942 ~ 26298782 (+) True G33383
TU39398 lncRNA downstream 25370 26557888 ~ 26558405 (+) True G33440
TU39836 lncRNA downstream 107900 26640418 ~ 26642174 (+) False st6gal2b
TU39839 lncRNA downstream 109688 26642206 ~ 26649387 (+) True st6gal2b
TU39984 lncRNA downstream 277940 26810458 ~ 26820107 (+) False LOC113538244
XR_004579527.1 lncRNA downstream 277952 26810470 ~ 26826974 (+) True LOC113538244
XM_026933432.2 mRNA upstream 41604 26484650 ~ 26489299 (+) True ackr3b
XM_034298768.1 mRNA upstream 41604 26484915 ~ 26489299 (+) False ackr3b
XM_026933394.2 mRNA upstream 122635 26265497 ~ 26408268 (+) False agap1
XM_034311494.1 mRNA downstream 7929 26540447 ~ 26553487 (+) True mlpha
XM_034311500.1 mRNA downstream 7929 26540447 ~ 26553487 (+) False mlpha
XM_026933135.2 mRNA downstream 7929 26540447 ~ 26553487 (+) False mlpha
XM_026933134.2 mRNA downstream 7929 26540447 ~ 26553487 (+) False mlpha
XM_026933136.2 mRNA downstream 7929 26540447 ~ 26552720 (+) False mlpha
TU38758 other upstream 1876938 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other upstream 1876938 24653185 ~ 24653965 (+) False LOC117598985
TU38551 other upstream 2509867 24020378 ~ 24021036 (+) True G32684
trnaf-gaa_16 other upstream 3054880 23475951 ~ 23476023 (+) True trnaf-gaa_16
XR_004579462.1 other upstream 3928565 22598341 ~ 22602338 (+) False tmem69
XR_003403845.2 other downstream 81132 26613650 ~ 26629851 (+) False st6gal2b
TU39837 other downstream 98076 26630594 ~ 26648369 (+) False st6gal2b
XR_003403829.2 other downstream 1237278 27769796 ~ 27787602 (+) False adam23a
trnar-ccg_4 other downstream 1640124 28172642 ~ 28172714 (+) True trnar-ccg_4
trnas-aga_1 other downstream 1720952 28253470 ~ 28253551 (+) True trnas-aga_1

Expression Profile