RNA id: XM_034311759.1


Basic Information

Item Value
RNA id XM_034311759.1
length 7246
RNA type mRNA
GC content 0.49
exon number 25
gene id setd5
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13836547 ~ 13864669 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTATGGTTGTGTGTCAGTTTCGCTGGCAGCCGCGGTCGATGCCGGTGAGGAGGGGGATGGGCGCCACTGCAAATGTTGAGGACCTGAGCTAGAATCACAGCCTTGTAACACTCAGAGCTGTACCTACCCCAAATAAATATCGACTATAATTATTGTAAAACAACATTATAAATGGATGCAACCACCGGGGATTCAAAATAACACTTGAAGGAAGTGCTATGACCCAAACAGAAAAGGGTATGAAACTTTCACCCACTGCGTGAGGGACATTGAGAAGTTTGGAAGGTTCCCCGGGAGAGGGAGCTGCCTCTCGGCTTACAGCTCGCAGGAAAAGCCGAGGTCACAAGAAGAGGCCTCGTAGGTCTGTTTCGGTTTGATGTGGGGATATTTAAATACAGCCAGTAAGCCCAATAGGATATTTTACCTGAACTGAGCTGGAATGAAGGGCTGGgTCTCCTGATGTGTGTCAGGTGCTGTGAGTGGCATTGCAGCACCCCACCTCAGGAGTGGACTGTCTCTGCCATCCGGATTTCGTGATTCCCTCTTCCCTCCCCCTCCTCTCCTTTCCCCCTGTCCCTCCATCCCTATTCCCCCTCCCTTCCCCCTTTCCCCCCCTCCCTTGCGGCGCTGTGCTTGAAGTCATGAGCATAGCAATCGCACTGGGAGTCACCACACCTGAGACACCTTACACAGACATGGCCGCCGGATCAGATCCTGAGTCAGTGGAAGCGAGCCCTGCAGTGAATGAGAAGACATACTCAAACCACAGCTGTGGGAGCGCACAGAATCATGGATACCGGGGCCTGCCCTACGCTGATCATAACTATGGAGCGCCACCCCCTCCTACCCCTCCTGCCTCCCCACTCTCCCAGACCATCATTCCCCGCCTGGAGCTCAATGGCGCCCTCGGCCGTCCCCGATCCCGTTTCCACACCAATGACCCTGACAACTCGGCTGACAGCGACAGCTCTTCAGAGGAGGAGGGCGCCGTGCCATCAGGCTGGTGCCAGTGCCAGTGCCGCCTGACGTCAGACCGCTACCTCATAAAATGCGAGAGCTGCAGGGGTCTGGACAGGAGGAAAGGGCTGGATGGGCAGTATCGGAAACCAGACAATGTGTCGGTAGGAGAGAGCAGTGCTACAGAAAGTGGAGATGAGGAGGTCTCAGCTGCCACAGTGTCATACACAGCCACTCAGCACACACCCACCAGCATCACCCTCACTGTTAACAGAGTCAAACGCAGCAAAgccaagaagaggaagaagagcacGGAGAAAACACGAGCCGCCCCTAAAGCTAAGAAAGTAAAGTCTTTTAGAGAAGGTTCCAGAAAATCCTTAAGGATGAAGAACTCCACCAGTGAAGCGAGTGTGTTGGATGAGAACACGGCTGAAGGCTGGGAGACGCGTATCCGCCAGTGGACAGATCAGTATGAGGAGGCTCAGGCCAATCAGTACAGTGCTGATGTTCAAACACTTCTCCAGCTCCATCACTCTGCCACCAAGAGCTCTCCGAACCCAGCAGCCCTCGCTATGGACACCATCAACCGCACAGAGTTGGCCTGTAACAACACCGTCTTGAGCTCTCAGATGCAGtTACAGCTGGGCCGTGTAACACGAGTGCAGAAACACAGGAAAATCCTGCGAGCAGCACGGGACTTGGAGCCTGATACACTCATCATTGAGTACAGAGGCAAAGTCATGCTTAAACAACAGTTTGAGGTCAATGGGCACTTCTTCAAAAAGCCCTACCCATTTGTCCTGTTCTACTCTAAATTTAATGAGGTGGAAATGTGTGTAGATGCACGGACATTTGGCAATGATGCTCGCTTCATCAGGAGATCCTGTACACCCAATGCTGAGgtGCGGCATATGATTGCAGAGGGGATGGTTCACCTGTGTATTTACGCTGTTACTCAAATCTCCAAAGATACCGAGGTCACAATTGGCTTTGATTACGAATTTAACAGCTGTAACTACAAGGTGGACTGTGCATGTCATAAAGGCAATCAGAACTGTCCCGTGCAGAAGCATAACCAGAACCCATCTGAGGCGCTTCTGCCCCCACCGCAGAACCCACTACCTACTCTGCCCGGGGCAGAGACTCGCCGAAGGCGGGCACGGCGAAAAGAGTTAGAGGGAAGTGGACTGATTGGGAGTGTGTCTGATGATAGTAATCAGTTACTGGACGAACATGGGGAGCATGGAACTAGTGAAGCAGAGGAGGGTCTGATAGATGGTGTAAAGCAGGAGGAGGGCCAAGAGGAGGTGGATGAAACTGGAGCACCCATAACTAATAGACGGTCTCGAGAGGACCGGAAAGCCGAGGCCATCATGCACGTGTTTGAGAATTTGGAAAGGAGGAGGAAGCGGGTTTCTCAGGGTACAGAACGTGCCGGGCTTGACGACCTCAAACAGGAAGGGGTGGGGCCTGATGAAGGTGGGGCCTCCTCTCCCACAGGGGCTAACCCAGGTCAAAATGCAGGGTTGATGGGAGGAGTTAGCACACGCCGTACATCTTTTGCCACAGACCCAGTGACATCAGTTGAGTCAGAAAAGCCTTCCTCTGCAAACCTTGTAGCTCCCAAACCTCCCCCAGCACGTCCCAAGCAGCGGCCCAAGAGTCGCATCTCTCGTAATCGGGCGAGCTCTGCCCAGCGGGCACGTCGCCAGAGGCAGGCTCTTCTAGCACAGCAGGCAGCCGAGGCAGGAGCAGCAGGTGGAGAAGAGGGAGGTACTGTGGCTGGCACAGGCGAGCTGGGTCTCGGGGATGGAGCTCTGGGAACTGGACAACCTCAGGATGGAGAGAGCTATGGAGTCTCATCTACAGCGCTAGGCAGCAAGACAGGCGTGAGATGTcccaaaacaaaaaagTACCTGGTGACAGAGTGGCTGAATGACAAGGCCCCAGACCGTGTAGAGGAGCCAATAGAGCGGCCCCTGCGCATCACCACAGACCCTACTGTGCTGGCTACAACACTCAACATGCTGCCAGGCCTCTCGCACTCACCCCTCATCTGTACCACCCCCAAACACTACATCCGCTTCGGCTCTCCATTCAACCCTGAGAGACGTCGCCGGCCCCTTGTCGTTGATCCCGCCTATGGCTCCTGCAAGAAAAGGTGGATAAAGCAGGCGCAGGATGAGAGCATGTCCTCTCTTTCCATGGAGGACGGAACTGAGTCCAACTCTTCACACCAAAGTAACAGCAGCAGCACGGCCTCCAGATCtgAGTTAGTGGCACCCTTTAAAAAGAGGAAGTCAAAGTATGCACCAGAAACGGTCGCACCACCTTCTGAACTTCTGCTTCGACCTTTGTCCCCCATCACACCTCCACTGCCGTCTGAGCCCTCTGAGAGCTTGCTACACCCTCTTCTCTCTTCCTGCTCGCTGTATTTAGGAGCTGAGGAGAGGCAGAATGGTGCTGTGCCAGCATACTCACCACTCCCATCTCTTCCTGCCAGCCGGTGCAACACACCTCTGCAGTTTGAGAACATCTCATCTCCTGAGGCATCTCCTGTACACAGGCCAGAGTCTCTTTCTCCAGAGcCCTGTTTGCGACCAGATTTTGATACACCGCGGATCACCACCTTCCCTGAACTTTCTGTGACATCTGGTCTTGGCAGTCCAGCGCCTCCATCTGACGATTTTCCTCTGACTGGACCAGAGTCTCTGACTGGTTCTGGAGATGGTGTGTGTCATACACCAGCGCCTGTATCTAATGCCAGTGACGCTTCATTGGGCTCACGCACAAATGAGGCTCAGGTTCGAGAGCAGGTCTTTAGGACCGAGTTCAACCTCATCTACACCTGCTCTCCCCTCAATGCCAATCTGACCACTGGTCCTGTGACTGACCGAAGGCATTCGCAGTCAGAAGGCAGCTTCTCTCCTGCTGAATCCTACTTCAGCTCTGTGAGTGGCCAAGGCGTAATGACTGAGCCAGGGTCTGATTCTTTTTCGCCCTACCCTGAGCCTCAGTTTGGGAGTGGCACGCCTCCTCATACCAGCAATCCACCACAGAAGAAGAAGAGGGCCATGGGAACTGGCGTTAGTCAGCTGCCAGGCTTGCCTAGTTACCAGGCACTAGCTGTAAGGCGTGAATTCAAGCCAGGGCAGAATATGGTATCTTTGCTGGAATATCGGAAAAGAAAGCAGGGAACGCGGGACCCTGAGCCAGTAGGCTCTGCTGGTGGCACCATTGGTACCCCCGTGCGCACTGGCTCTCTGTGCCAAACTTCTGAATCCCCTGGTGGGCCGCGCTCACTGCTGCAGCCGCCCGCCTCCCCACACAGCTCCTTCTCCTCTCCAGCCCATCAGCCATTCCCACAGATAGAGGAGGTCAGTCCTCCTGATCTCAGCACCACCATGGGGAATCACTCACAGACATCCAGCCACTGgatGGTGCCAACATTAGTGGAGAGGTTAAGGGAAGGGCAGGGAGTTTTAGAGCGTGTTCTGAGGGGCAATATGAAGATGGAGCGGATCCTTAAAAGGTCGGAAGGTGGAGCTAGTGAGCATGGTAGTAACCGAGACAAAGATATAGATGGACTGGAAGAGGATAGATATGCTCTCCAGAGCTCATCTTTGACTTCCCCCATGATGAGTCCTCAGAGGTACAGCCCAACTGTTCACCCGCACCAGGTGCAGCCTCATTTGGCAGAACCCGATCTACATCTGGAAAGCTCCACCTACCACCAGCAGAGTAGCTCCTCTCCTTTTCATCCCTCCTTCAGCTCCTCTCCTTCACCCTCCTCTTCATCAGTGGTTCAGGGCTACCATCCTTCTCGACTGGGGACACCTGCTTCTCTAGCCCAGGATGTGCTCTCCTCTTCAGCCCCTCCTTCAGTGGACTCCAGGCACACAGGGCGCACTCTACACCATCATAGTAGAGCAGGAGGGATGGACCTGTCGCACCTCTACTCAGACAGCCATCATAAAGCCAGCCTGTTAAACAGCAGCACTCTTTCAGGGTCTATGAGTGTGTCCTCCAGAGGCCAGGGCCACTCGGACAGCTGCACTGCCATTAGCAGCCAGGCCTCCCACGCGTCCAGTCTAGCCCAGTCACCCACAGTGCGAAACCTAAAAGCAGGCAGCCCCAATCCCTCAGTGCTGCAGGCCAGCTCCAGGCTTCTCTCAGCCAGCGGAACACAGCACTACCCACAGCGGCATTTACAGCAGCCCCCTATGCAGGGTTCAGGTGTACGGACACATTCTGGGACCTACTAGGACTCTTTGCGTGTTTGTATTTGAGAGCATGTATgaatgtgagagtgagtgtgtatatgtgtgcttGTCACCCTCCTCAACTAAACCTGTGGATAAGTTCTGGGTTAGAGGAGGGGACTTGATGTACAGACGTCAGAGTATGGACTCAGCCTCTTGTAATGATCACCTCTTACGTTCTTTATCtttattgttttcctttttttctttttttatcattgtCACCAAAAAATCCTGCATTTCTGCATTCTATAAGTAGTCTGGCGTGGATTTCATTATAATCGTGCagtcagtgaaaataaaaatataaccagTTGGCAGGGGAAAAAGCAAGCGCTAAATCAtgtgtaattttaaatttaccCACATGCTTTGAAAATACGTTCACACTTAATTTACTTAGGTAGGTGATGAATTGAATCAGGCACCTATgctgaaataaatcagtgctgATAATCAGCAACCTGGTTGGAATTGTTAGATCAGTGAGAGCATTTGGTGCTTTTCAATTTGCTCACTCATTAAATTCAGGTCAGTCTGCTAGACCATTCACTGACAGCTGAATTTTCTTCAGGCAAAGTGTTTGTTAGATTCATTCACATGGGTATGTAGGTAAAATTCATTTACTTAGTCTCGCTTCCTCTTAATCATTCCATTCAGTCTGTCAACTGTCACTAGGTTTCCAGGATCATTTCTtggcatccattttttttttttttttttctttttttttttttttttttttttaaatgtagactcATTCTGTAATACTTGACAAACACAGATCTTATGGTGCTGCAGTTAGATCAGTCTTTGTTTGAACTGACTTTAGGGTTGTTTGAAACCCAGTATCATCATGTCCATTAATAGTCTGTTCTAATGTATAGATGTCATATGGgactggttttattttcatttttaaaactggGTTCTAGTAAATGTTGCTTTGGTGACTAGAAATGCACGGGACTATTTTGAAAAGtaagctgcagaaatattgTTTTTACTCCGTTATAGGATTTATTCCCCTCACAGTTGTTGAATCCTGCAGGATTTTTTATTGTCATATCATTgagaatttatttttctctccctttgACCAATCCTTGCATTCCATACACCACTCAAGGAAGGAGAAGGGGAGGTGTGGCTGGATGGTTTGATTAggacaaaaaagacaaatataaaaaagtggAAAAGATAGCTGCTGGGGTCTCGTACTAAGTATTTTTCATGCAAAGTGCTGCTTTCAGACATGtctgggtgtgtttttttttttttattattattttaaatacagaatgCTGTACTTTTGTCTGTCTGATATTCATCAAAAAAACGGTGAGGTCCCCTAGTTGTGCCATGATGACAAACAGAGTGGAACAGAATGTCAAATCAAATGCAATGGATACCACTGTTGAATCTTGGGAACTGTAGTTTTTGTCTTGTTGGTCTGTTGGGTGGACTCGAGATGGACTAAATCTACAGTGACCCAGAAATCAActgaaacaagttttttttttgttgttgtttgttttcctcCCTCAATTGAAGGACCTTGCAGGAGATGGGGAAATTAACAGGTTCATTTGATCAGATTTTGAGATACATTTTGACCTTTGTTCCTCCTCCCCGTTTAGGAAACGACTCAAGGGTACTCACTGATTAACATGAATGTTTGTCTTTTCACAGAAGActtcaaaagaaaaagattttatgACCAGAAATTTACCAGCACCTTAattacaaaggaaaaaaatgttaacaagcAAGAAAACATTTATGTATGATCATGTGTACTTGCATAAAATGTGTTATATACTGTTCCAAGAAAATATAGTACACTAAATTTGCCGcatgatattttttcttttgggTTGGATTAACAGCTGAAAAACTGGACATGtttcaaaagttttattttttacacaaatcAAAGTTTGGACCCCTCCCACTCCTTTAAAAGTCAATAAGCAGAAGATATGTAATGTCTTTTGATAATAAAATAGTCATGACAGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31732 lncRNA upstream 201 13834239 ~ 13836347 (+) True G26875
TU31730 lncRNA upstream 11322 13822384 ~ 13825226 (+) True G26873
TU31688 lncRNA upstream 207082 13626481 ~ 13629466 (+) True G26848
TU31569 lncRNA upstream 319145 13434904 ~ 13517403 (+) True G26749
TU31741 lncRNA downstream 8646 13873315 ~ 13873523 (+) True G26884
TU31779 lncRNA downstream 136262 14000931 ~ 14054690 (+) True G26921
TU32056 lncRNA downstream 305111 14169780 ~ 14172077 (+) True G27164
TU32160 lncRNA downstream 605421 14470090 ~ 14470420 (+) True G27262
TU32167 lncRNA downstream 626111 14490780 ~ 14491136 (+) True G27269
XM_026924315.2 mRNA upstream 2522 13827423 ~ 13834026 (+) True si:dkey-19e4.5
XM_026912854.2 mRNA upstream 15065 13755817 ~ 13821483 (+) False plxnb1b
XM_034311880.1 mRNA upstream 15065 13756091 ~ 13821483 (+) False plxnb1b
XM_034311889.1 mRNA upstream 15065 13768043 ~ 13821483 (+) False plxnb1b
XM_034311898.1 mRNA upstream 18655 13746014 ~ 13817893 (+) False plxnb1b
XM_026916723.2 mRNA downstream 47395 13912064 ~ 13930791 (+) True mtmr14
XM_026916732.2 mRNA downstream 47396 13912065 ~ 13930791 (+) False mtmr14
XM_034311785.1 mRNA downstream 66471 13931140 ~ 14018732 (+) False LOC113533199
XM_026925269.2 mRNA downstream 66471 13931140 ~ 14017600 (+) True LOC113533199
XM_034311792.1 mRNA downstream 66471 13931140 ~ 14017600 (+) False LOC113533199
XR_004577012.1 other upstream 335252 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 337183 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1326915 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1414158 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2316649 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 4910101 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 4952733 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile