RNA id: XM_034311946.1


Basic Information

Item Value
RNA id XM_034311946.1
length 1538
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC117599264
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22390253 ~ 22392793 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTATTTTTTGAACATCTGATTGGACAGCTGTGTTGGAACGTCAGCCACACACGGAACCGTCGCTGTTTAATGACGAAAGCGACCTGGATTGAAATATGGCCGAACGCGAAGCATTGGAAAGGGAGATAGAGAAGTTACAAAACCTTATTAAGGACCACAAGAGAGTTCATGGTGATGCCCCGTCAAGTTCAACTCGGGGATTTTCTACAAAACGTGGCCTGGGAAGGGGTCAGGGTCACAACCCATATTACGCCACCTCATATTCACATCAGCCGCAGCCATATGCACCTCACTCCTCCAGCCAATGGAAGAAAAAATACTCACTCAACAACAAGACCACCAGAGCTCCTGGAGGAAGAGCCTCACAGATTTCTGAGCCGGATCTAAACAAGACCGGACAAGTCAAGGGTGCGGCACCTGatgcttgctctctctctggtgtCAGTAAGGTTTTACACGAGGGGACGCATAAGGCAAGCACGGTGCCTTCATGCAGCGTCATGGGAAAGGAGTCATCACGAGGGAATAACAGAGTCCCAGCTGATGGTGGGGACAGAACAGTATTAAAACCAAGGACTAATATTGAGTCCatcacagacctgtcagagtcgGCTTTAGTAAAGTCTGGACAACAGAGTGGACTTGATGGGAAGATGAGACAAAGTGCAACATCAGATATAAGGTGTTCAGCTACTTCAGCTGTTCTTTTATCTGAGGAGTCCAGTGCCTTTAACAAAAAGCGGACTGCACTGCCCCAAGTGAAATCCTACCTCACAAGGACTGTTTCAAGTAATAGGACTGTAATAATGGCTACTAAAGACTTACCAACTCTGACTTCCTCTGTGCCTACAGCGAAAGTTAGGCTTAAAGCAGATTTGGCTCCAGAGATTCAGGCAGCTTTGTCTCCTCATAAGACATCTCGGTTTACCTGGGTGAAGAGCCAAGAGACGGAGACCAGCCAACCAAGATCAGAGATCCACCAGTTTCCACCAAGCTCAGTTTCAGCGTCTACTGCTTCTCCAGTGGTGGccaaacacacccacacttCTAGCAAGAAGCTTCATCGCAAGCTCAGTTTTTCCCCCAGCACCCCTAGGACCTCGAAGTACTCTTGGGTGTCGTCCTCCTGTTCCCCTACAGCAGCTGCCAAATCAGCCATAGCTAAACTCCCGCACAAGCTCTTTTCACCCAAAGCTCTTAAGGTGCCTGGAAAaacagcaaaggagggactAGAAGGCAAGAAACTCACCACTACCGCTGTCATATCAAAGAGGGCTAAAGTCAGTGGAGGTGCTTCTACATCTCACGCGAGCCACGGCAGTCGCTACCGCTGGAAGGCAGTTGCAGCAACCGTCCACTGCGGTTGTGCGGGGGACCACGCCGAGGTCTTCTCGAAAGAGCTCAGTGTACCGATGGACTGCGCAGAAGGACGAGAAGGAGTCGGCATCACCGGCATCTCGAGTCCAGCACAGTCCTTCCACTCCTCTGCCTAGCAGTGGATTCAAGCTGAGGAGCAGAACCAAGATCATCAGGCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37446 lncRNA downstream 74247 22315806 ~ 22316006 (-) True G31755
TU37433 lncRNA downstream 163593 22224385 ~ 22226660 (-) True G31742
XR_004579710.1 lncRNA downstream 192585 22196594 ~ 22197668 (-) True LOC117599242
XR_004579711.1 lncRNA downstream 214513 22173351 ~ 22175740 (-) True LOC117599244
XR_004577195.1 lncRNA downstream 257555 22130425 ~ 22132698 (-) True LOC117596032
TU37625 lncRNA upstream 145530 22538323 ~ 22560608 (-) True G31916
TU37647 lncRNA upstream 172499 22565292 ~ 22568836 (-) True G31934
TU37648 lncRNA upstream 172499 22565292 ~ 22568836 (-) False G31934
TU37658 lncRNA upstream 184838 22577631 ~ 22577835 (-) False ccdc17
TU37680 lncRNA upstream 189555 22582348 ~ 22585190 (-) False gpbp1l1
XM_034300900.1 mRNA downstream 68203 22319135 ~ 22322050 (-) True mafaa
XM_034314538.1 mRNA downstream 190619 22157708 ~ 22199634 (-) True LOC117599932
XM_034314533.1 mRNA downstream 240015 22144203 ~ 22150238 (-) True LOC113538524
XM_026916626.2 mRNA downstream 344057 22035213 ~ 22046196 (-) False usp1
XM_026933520.2 mRNA upstream 91299 22484092 ~ 22514058 (-) True adcyap1r1b
XM_034300001.1 mRNA upstream 154461 22547254 ~ 22552299 (-) True LOC113538473
XM_034300010.1 mRNA upstream 154461 22547254 ~ 22552227 (-) False LOC113538473
XM_034300006.1 mRNA upstream 154461 22547254 ~ 22552113 (-) False LOC113538473
XM_026933565.2 mRNA upstream 154461 22547254 ~ 22551325 (-) False LOC113538473
XR_004580163.1 other downstream 858825 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 1223364 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 3507937 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 3688356 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 4238036 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 4247040 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile