RNA id: XM_034312045.1


Basic Information

Item Value
RNA id XM_034312045.1
length 1678
RNA type mRNA
GC content 0.53
exon number 4
gene id zgc:152986
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 2717897 ~ 2721343 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGATTACTCTCCCAAAACACGAGCAGGCTGAGCGCAGTCACGGAGAAGAAGCGGAGAAGACCAGCGCGCCCTCTGCTGTGcggaggaggaactacagcgcGCCCTCTGCTGTGCGGAGGAAGAACTACAGCGCGCCCTCTGCTGTGCGGAGGAAGAACTACAGCGCGCCCTCTGCTGTGCGGAGGAAGAACTACAGCGCGCCCTCCTGCTGTGcggaggaggaactacagcgcGCCCTCTTGCTGTGTGGAGGAAGAACTACAGCGCGCCCTCTGCTGTGCGGAGGAAGAACTACAGCGCGCCCTCTGCTGTGcggaggaggaactacagcgcGCCCTCCTGCTGTGcggaggaggaactacagcgcGCCCTCTGCTGTGcggaggaggaactacagcgcGCCCTCTTGCTGTGtggaggaggaactacagcgcGCCCTCTTGCTGTGtggaggaggaactacagcgcGCCCCTCTAACTACAGCGCGCCCTCTGCTGTGCGGAGGAAGAACTACAGCGCGCCCTCCTGCTGTGCGGAGGAAGAACTACAGCGCGCCCTCTGCTGTGcggaggaggaactacagcgcGCCCTCCTGCTGTGcggaggaggaactacagcgcGCCCTCCTGCTGTGcggaggaggaactacagcgcGCCCTCTTGCTGTGtggaggaggaactacagcgcGCCCTCTTGCTGTGtggaggaggaactacagcgcGCCCTCTGCTGTCCAGAAGAGGAACTACAGTGCAAAGGCAGTCGATGGCTCTGGCAGTCCGTGTGAGTGTCCTGCTGCTgctctgcgtgtgtgtatgtgtgtgtttggctgattattattcagtgttaGGAGTTCCTCGCTCTGCGTccgagagagagataaagaaagcgTTTCACCAGCTGGCCCGGAAGCTCCACCCGGACAGGAACCACAGCCCAGATGCTCAACACGTCTTCACACAGCTTGCACAAGCCTACGAGGTTCTGTCTAACCGAGAGAGACGGAGAATCTACGACCAAAACGGAGAGACGGAGAAGAAGCAGGATTTTTATGGCGACCAACACGGTTCCTATGGTGACAGCGATTTCCTGGCCTTCGGTCTACATGAGCTCCTGAATATGCTGCGGATGGAGGATGATTTCATGATGTGGGAAGATGCGGGTCTGGGTCACGGGTGGAGCTTTACAATGTGGGATGAAGAtcaggatgatgatggtgatcaTCTCAGCGAGATGTTCAGTATGCTGTAAGatcagagagaagaagagtAATTGTAAGATATTGCAATATTGagtgtattttaatttcatattaaataaagtatctGTTTTAAAACAGGTTATGATAATGATTCATTCGGAATCCATGCGGGTgccagcattttttaaaatttttttttaatatgctgttattaaaacgatcctgagctcaggttacggTCTGTTTCctggatttcctctgggtttccaGATAAATTGCCCcgggtgtgaatgagtgtgtgaatgtgtgtgtttcatgaaCTAACATGTCGTCCAGGGTGCACTTCAGCTAAACTTCAGCTGAGTCAGCAAAATCCAAACCTGCTTCTGGTCGGGCCTTTGCTCAGCTCCACACATAGGAatgactgtataaaaaaaaaaaagcattttacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24582 lncRNA downstream 55267 2662312 ~ 2662630 (-) True G20644
TU24581 lncRNA downstream 56192 2661434 ~ 2661705 (-) True G20643
TU24568 lncRNA downstream 84217 2604707 ~ 2633680 (-) False LOC113545802
TU24492 lncRNA downstream 167350 2550346 ~ 2550547 (-) True G20567
TU24459 lncRNA downstream 262463 2455230 ~ 2455434 (-) True G20537
TU24621 lncRNA upstream 24265 2745608 ~ 2747092 (-) True G20675
TU24760 lncRNA upstream 226835 2948178 ~ 2948401 (-) True G20801
TU24911 lncRNA upstream 341907 3063250 ~ 3064519 (-) True G20920
TU24912 lncRNA upstream 341907 3063250 ~ 3064519 (-) False G20920
TU24955 lncRNA upstream 364261 3085604 ~ 3085949 (-) True G20942
XM_034311186.1 mRNA downstream 2230 2702380 ~ 2715667 (-) True LOC113545857
XM_034311190.1 mRNA downstream 17545 2688030 ~ 2700352 (-) True LOC113545965
XM_026945652.2 mRNA downstream 31003 2667822 ~ 2686894 (-) True LOC113545966
XM_026945653.2 mRNA downstream 32008 2667822 ~ 2685889 (-) False LOC113545966
XM_026945416.2 mRNA downstream 106942 2604654 ~ 2610955 (-) True LOC113545802
XM_026945644.2 mRNA upstream 17102 2738445 ~ 2741771 (-) True ghrl
XM_026945502.2 mRNA upstream 38510 2759853 ~ 2803605 (-) False slc4a8
XM_026945501.2 mRNA upstream 38510 2759853 ~ 2803518 (-) False slc4a8
XM_034312792.1 mRNA upstream 38510 2759853 ~ 2788227 (-) False slc4a8
XM_034312787.1 mRNA upstream 38510 2759853 ~ 2788226 (-) False slc4a8
TU24006 other downstream 895335 1812759 ~ 1822562 (-) False slc9a7
TU23548 other downstream 1680323 1028859 ~ 1037574 (-) False slc48a1b
trnaq-uug_1 other downstream 1756290 961536 ~ 961607 (-) True trnaq-uug_1
XR_004577153.1 other downstream 2064879 652731 ~ 653018 (-) True LOC117595970
XR_004577109.1 other downstream 2120088 596887 ~ 597809 (-) False LOC113545844
trnaf-gaa_13 other upstream 315941 3037284 ~ 3037356 (-) True trnaf-gaa_13
XR_004580246.1 other upstream 996372 3717715 ~ 3736886 (-) False npepl1
XR_004579840.1 other upstream 1028675 3750018 ~ 3777988 (-) True rab22a
TU25557 other upstream 1535325 4256668 ~ 4257087 (-) True G21434
trnaf-gaa_14 other upstream 1610756 4332099 ~ 4332171 (-) True trnaf-gaa_14

Expression Profile