RNA id: XM_034312090.1


Basic Information

Item Value
RNA id XM_034312090.1
length 662
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC117599286
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4442811 ~ 4443641 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTTGCATCCTCAACCTAGCTAGTGATAGAGGAAACAAAAATGTCCTCGCTTGACAGAGTAAAAGTATTAGTCTTGGGAGATTCAGGTGTTGGAAAGTCGTCTTTAGTTCATCTGCTGTGCCATAACCAGGTTTTGGGAAATCCTTCATGGACAGTTGGTTGTTCTGTGGACGTCAGGGTCCATGACTACAAAGAAGGCACGCCAGAAGAGAAGACCTACTACATTGAACTGTGGGATGTTGGAGGCTCTGTGGGAAGCGCCAGTAGTGTTAAAAGCACCAGAGCAGTTTTTTACAATTCAGTTAATGGCATTATTCTAGTTCATGATCTGACCAAcaaaaaatcctctcagaatcTGTATCGCTGGTCAATGGAGGCATTAAACAAAGATTCCTCTCCTACAGGGGTCATCGTGTCGAATGGGGATTATGACAGAGAGCAGTTTGCAGACAACACCATCCCTCTCCTGCTAATAGGCACCAAGTACGATCAGATCCCTGAAAACAAGAGGAATGATGTCCTGACTCGCACCGCCTTCCTATCTGAAGACTTCAACGCAGAGGAGATCAACCTGGACTGCACAAATCCACGCTACTTTGCTGCTGGCTCATCTAATGCTGTAAAACTGAGCAGATTTTTCTTCTGGTTTatctgtgactga

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07933 RABL3; Rab-like protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579534.1 lncRNA upstream 8075 4429407 ~ 4434736 (+) True LOC113545955
TU25662 lncRNA upstream 10328 4429422 ~ 4432483 (+) False LOC113545955
TU25610 lncRNA upstream 101471 4341127 ~ 4341340 (+) True G21475
TU25604 lncRNA upstream 106175 4336254 ~ 4336636 (+) True G21469
TU25570 lncRNA upstream 115027 4275073 ~ 4327784 (+) False slc32a1
TU25675 lncRNA downstream 13631 4457272 ~ 4457846 (+) True G21514
TU25744 lncRNA downstream 82282 4525923 ~ 4526332 (+) True G21577
TU25799 lncRNA downstream 214573 4658214 ~ 4663379 (+) True G21629
TU25948 lncRNA downstream 364482 4808123 ~ 4808427 (+) True G21763
TU25957 lncRNA downstream 387262 4830903 ~ 4834058 (+) True G21771
XM_034313268.1 mRNA upstream 17267 4392506 ~ 4425544 (+) True LOC113545914
XM_034313277.1 mRNA upstream 17267 4392506 ~ 4425544 (+) False LOC113545914
XM_026945573.2 mRNA upstream 17267 4392506 ~ 4425544 (+) False LOC113545914
XM_034313274.1 mRNA upstream 17267 4392506 ~ 4425544 (+) False LOC113545914
XM_034313279.1 mRNA upstream 17267 4392506 ~ 4425544 (+) False LOC113545914
XM_026945450.2 mRNA downstream 123093 4566734 ~ 4587196 (+) True igfbp5a
XM_026945569.2 mRNA downstream 207365 4651006 ~ 4692028 (+) False stk11ip
XM_026945567.2 mRNA downstream 209358 4652999 ~ 4692028 (+) True stk11ip
XM_026945566.2 mRNA downstream 209358 4652999 ~ 4692028 (+) False stk11ip
XM_034310135.1 mRNA downstream 264946 4708587 ~ 4717273 (+) False LOC113545806
trnah-gug_1 other upstream 91063 4351677 ~ 4351748 (+) True trnah-gug_1
XR_004580256.1 other upstream 701121 3738008 ~ 3741690 (+) False LOC113545962
XR_004580255.1 other upstream 701121 3738253 ~ 3741690 (+) True LOC113545962
XR_004580290.1 other upstream 864503 3564210 ~ 3578308 (+) False LOC117599944
XR_004579769.1 other upstream 1075524 3340446 ~ 3367287 (+) False gorasp2
XR_003404681.1 other downstream 216368 4660009 ~ 4660123 (+) True LOC113545978
XR_004579614.1 other downstream 310625 4754266 ~ 4759645 (+) True spega
TU26030 other downstream 644493 5088134 ~ 5088578 (+) True G21835
TU26124 other downstream 764705 5208346 ~ 5208864 (+) True G21901
XR_003402786.2 other downstream 1273889 5717530 ~ 5753104 (+) False rbl1

Expression Profile