RNA id: XM_034312229.1


Basic Information

Item Value
RNA id XM_034312229.1
length 4776
RNA type mRNA
GC content 0.48
exon number 7
gene id shroom2a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20824340 ~ 20871696 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATAGTAACCCTATATAGGGAGCATGTAGGAATTTGGTATTCAGCCCAGGTTGTCTCCTGTAATCCAGAAGGAGGCTTGGCAACAAGTTACTCCGACATTCATTAGGCTGCTAACCGACGAGCCTTTTTTCATTTGCAgcgattatttttttatccattttgtATAGTGTTCACTGGATACACGTTtaggaaaaatgaataaacttaTCTTTATGGATAATAATAGGTATTTTTACCTTTTCTTTGATTAGAAATAACGAAATAGCCCGGCGTTAGCTTGGAAACCTCCTCTACCGGCTGTTTCCATAGTTTAGTGTAGTTTTGTTtgtagattttatttaacagtcaAATATTGACAATTCGTGGTATAGCGTTTTGTAAATTCAATATAAATcaaaactgctgctttaatcgGGTTGATCTACATTTAAAGGGTTAAAGTTTTGCGTTACTTTATTTTAATCTCCGTTGTTTCCGAGCTAACAGGCTAGCTGCATCCTAGCTAGCGACTGAAAACAAGTGGCATAAAAAAGTTTATTGGAGATGTTTTTTGATGCTTTTCTTTAAATTGTGTCAGGGCCAAAAGGAGAAGAGTTATTGAAACATAGGTTGGAAACTCAGGTTGTTTTTTAAAGCACTACCTCGTCaggagaatttaaaaaaaaaaaaaagaaagaaagaaagaaaagaaaagccgTGGCGCTCCTCGAGTAGCCTTCAGCATCAGCGAGCTCCATTTCCAGTCCCACAGTCACCATGCTGGCGGGGAACCAGCTCACTTCTGCACTGTTCCGAGGTTTCACAGGACAGGTGCTCGTGTAGCTGGAAGCGTAAAGGCTTTTAAGGGAAGTTCGTCcctcagtttttttatttttttaaaccagggaTAAATTTAGCCAGTTAAGTCCGCAGTTTGAAGGCCAGGCggaagctgagtgtgtgtgaaatggacGCAGTGGATCATCCTCTGGGCTTGGACTCGGGGTTCAGTGTCCGGGATCACAGGCTGCTCTCTGACTCGGACAGGACTGCAGCTCACAATGGACACTGTGGTGAAGCCTggagattagtgtgtgtgtctctgtgtggaGGAGCTCCGTGGGGGTTCACTCTGAGAGGAGGACGAGAACACCGAGAACCGCTCATCATCACTAAGGTTGAAGAAGGCAGCAAGGCAGCGGCTGTGAGGCTCCAGGTAGGAGACGAGCTGGTAAACATCAACGAAGTTCCCCTGAGCGGCTACAGACAGGAGGCCATCTGCTTAGTCAAGGGCTCCCACAAGACTCTTACTCTGGTGGTGAAAAGGAAAAATGAACCCATGAGCAGGCCTCACTCCTGGCATTCCACCAAATTCAATGAGAACCAATCAGACTCTGCCAAAACACAGTCCACACCCTCGCCAGTCTGGCAAACAAGATATGATGCAAGTTCATTCTCCTCCGACCTCACTACTGGTTGGGACCAGCCTAATTTGCGCAGAGTGTCAGACCAATTCAGCTCCTTGGGCAGTATGGATAGTTTAGAACACGGCTCTTACCCCTATCCACCTGGACGCCTGTCTCCCAACAAATCTAACAGCAACAGTGTTGAACATTTAGTGGGTGGAAAAAGAGATTCTGCCTATAGCTCCTTTTCAACCAGCTCAGGGACACCTGATTATACGCTGTCCAGAAGCAACGCAGCTTCTACAGAGAATATGCTGTATAAAGTTAACCAGTCGGACTCAGGAAGTCGGCCTAGCAGTGGCAGACACAGCCAAACCCTAAGTGAAGGGATCCGACAGGATGACCGAATTGGTTATCTACAGCCACCTTCAGTAAGCAGTGGCCGAGAAAGCCCAAGAACAGAGGAGCAGCCAGGCTACCGACATTCTGCTTCTGGAAGGTCCAGCATTGCGCCTGTTTGGCATGTTCCTGATATGAAGAAGGCTATGGCCCCATCACCTCCACCGCCTGCACCACCAACACGCAGTGATAGTTTTGCTGTGACCAAGATTCATGAAAAGGGTCTGGTCTCCAGCTACCCTGAGAATCCTGGGATTCATACCCAGTCAAAGATCCAGGGCAAAGGATTAAAGACAGCAACAGAGATGTCTGAAAGTAATCAAAGGATTTACCGTGCAACTGAGTCAGGCCTTGAAACGTGTCAAAACTACAACCCACAACTTAAAATTGGCACGATTAATCCATATATTGCAGGTGATAGCTATAGTCAACAAACTCCCCTTCCAAACTCAAACAAGAAATACTCACCATCTAGCACTGATCAGTCCTACACTCGCGTGGCCTACCATCAACGTCAGTACAGTGATGAGAGCACTTTTCATGCACCGCCCAGGACCCCGTCTACAGGCAAGTCTCAGAGTTGCTATAGCAGCATGCAAGAGTTAcccaccaacaaccatgctccACACTATAGCCATAACCAGATCAGACGGCAGGTTGCATCGCTGTCCAGCACTGCTATTGACCAAAACCCTGACAGTCAAAATTCCAACAGGTATTACTGTGTCACATCTCGACAACCCTCTCAGGGAGGGTCCCAGGCCTCTTTATTGCACGCGGAGGACAGGAATGCTAATTCTCTGATGGAAATCACCCAAAGTGGAGGTGATAGAACTTCCATAAGCTCTCAAGGACAGCTCAAGGACAGGTTCACCACACCTCAGGTACTGCAGCACCCAAATAACAAAGACAGCAATGGATATTACAGACAGGTTGACAGCCAGCATCGGGTGTACACAGCAGTTAATAGGTCATCTTTTGATGATACAACAACTAAAGCTTTGGAGGTCAGAGGACTCCAGAAGCAAAACACTGTGACAAATTCAGATAGCCATTTCATGAAGCACTATGAGCAGGGAAAGATCTCTGAATCTTACAGATTGGGAGAATCCTCCAAAGAACATTTACCATCTAAAAATGAGACCATAGTATGCCCCCAGAAAACCCCTATGCTGCACTCTCTATCACATGATAGCAGTAGATTGGTTGACGTACAAAGTGAAATGGGTAGTGGTGATGGACAACAGGAATTGGTTGATCCCCAGAATGGCAGGCAGGTTCGACGTAGTGACCGTTTTGCCACCACATTGCGAAATGAGATCCAGATGAGGAGAGCTCAGCTTCAGAAGAGTCGAAGTGCAGCAGTCTTGAGTGGGTCAACTGATCCTGAAGAAGAGCCTTCAGTTTGGAAATCCACAGACATCTCTTCACCTTCCTCTGATGGTTCCTTCACTAGTGCCTATAAAGATCATCTGAAGGAGGCCCAAGCTCGAGTCCTTAAAGCTACTTCCTTCAGGAGGAGGGACTTGGAGCCAGTTCTCCTAGAGCACCCAGGAGCTGAAGTTCTGTCCACTTCTCGCAAGGATACACCATCTCTGCCAAGTGTCTCCGAGGTCCCATCAAGTAAACCTGCTTCAGGTACAAACCATGTGCCCCGTATATGTGGCCGAAAACGTTTTCCAGTAGAGAAGAAAGTACGGTCTTACTCTGAGCCTGAAAAAATTAACGAGGTTGGTGTTGATGAGGAGCCAGCTCCACAAGATAATGACCTATCTTTAGCCAACAGACGTAAAGTTTTTGAGGCAACAGGAAAACCCACTTATCGCAAACCCATGTTGAAGCAAAATCTGCAAATATCTGAAGACTCCAGATTGGACAAACCTGGAGAATTGCCTCAGACTGGACAAAGTGATATCACCAAGAACAATAGTGATAGCAAGGCAACACATAGTGGCCCAAATTCCTCACAGAGACTGGGCACTTTTGCAGAGTATGAGGCCACATGGAGCACACAGAAAAAAGCGGATCCCAGGACATCTGGAAGGTACCACTCAGCTGATAACATCCTCGATCCAGCAGTGGATGAGCGACGTAAGCCCTCCTATTTCCATGAAAGGTCACGCTCCTCTCCCTCAGAGGACTTCTATGGTCAGAACATCCCAGTGGAAGGAAGGAAGTCAGCTGAGTACTGTCCACCTGAGAGAAAACTCTCTGATCATGACAACTCTACATCGAGGTTAAGTGACGGAGGATGCAAGGGTTTATTGCCCAAGCCGAATCAAGAACCAGCATCACTTTTGACAGGAGGAGAGTTGGAGAGAAACGTCTCAGATCCACCATCCACTCGTAAATCTCCGCCCAACCCTGCTGGTCCTTCTCAACATTTCCCCGATCGTAGCATCCTCACTGATTTCTCTTCCAATGCAAAGAACAGGCCTCTGACACGCCTGGACAAATACAAATGCCCCGAGGCCGCTGCTCCTCTCTTCACCTCACAGGGTGGAAACcgtgtctctcactctcccatTAAAGACATCGTTTCTAAAGACACGCCAATCCACGCCCCAGTATCCTGGAAGGACCCGGAGCATAGCACGGGTCCaaaaagagaggaggagacTCAACCAGAGACCTTaccccttcctcctcctcctcctcctcctcctcctccctcctccagAGCCTCCTGCCCACCTGACTCCACCCAGCATGGAACGGCAGCGTTCACCATCACCTCACTTTGCTCCCCAGAGACTGACTGACAAGCcgcctgtctctgtctcccagCAGGATGAAGCCACAGGAAGgATGGACAAGGTGATTGACGATAGCACCACAGTGAAAAAAGTGCCTATCAAGATCGTCCACTCTGAAAGCAgtacagagaaagagaatcGACAGTACCTTCACCCAAGCACCGAGACACCTCTCAGCTCACAGCCCACAGTCTTGTCTCTGTCCAGTCTGGGAGCCCCAGAGCAATCCTCCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579663.1 lncRNA upstream 42432 20770555 ~ 20781908 (+) False LOC117599214
XR_004579661.1 lncRNA upstream 42432 20770595 ~ 20781908 (+) True LOC117599214
XR_004579662.1 lncRNA upstream 42432 20770595 ~ 20781908 (+) False LOC117599214
TU36141 lncRNA upstream 143570 20680400 ~ 20680770 (+) True G30620
TU36067 lncRNA upstream 166260 20575962 ~ 20658080 (+) False dlg1
TU36280 lncRNA downstream 95172 20963432 ~ 20963641 (+) True G30747
TU36341 lncRNA downstream 225354 21093614 ~ 21093816 (+) True G30791
TU36879 lncRNA downstream 516746 21385006 ~ 21385342 (+) True G31260
XR_004580180.1 lncRNA downstream 533982 21402242 ~ 21406386 (+) True LOC113526220
XR_003402742.2 lncRNA downstream 535213 21403473 ~ 21406386 (+) False LOC113526220
XM_026921723.2 mRNA upstream 140849 20674401 ~ 20683491 (+) True lrrc40
XM_026916946.2 mRNA upstream 152594 20658819 ~ 20671746 (+) True meltf
XM_026916919.2 mRNA upstream 168588 20536973 ~ 20655752 (+) False dlg1
XM_034311515.1 mRNA downstream 8685 20876945 ~ 20880467 (+) True cldn34a
XM_026924733.2 mRNA downstream 8685 20876945 ~ 20879525 (+) False cldn34a
XM_034314801.1 mRNA downstream 25763 20894023 ~ 20948637 (+) False wwc3
XM_034314792.1 mRNA downstream 25764 20894024 ~ 20948637 (+) True wwc3
XM_034314817.1 mRNA downstream 25764 20894024 ~ 20948637 (+) False wwc3
XR_003403752.1 other upstream 714115 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 1287326 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1997420 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 2006865 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4642037 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 146598 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 1730081 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2607691 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3152118 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3784730 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile