RNA id: XM_034312745.1


Basic Information

Item Value
RNA id XM_034312745.1
length 2020
RNA type mRNA
GC content 0.44
exon number 8
gene id slc25a55a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13510328 ~ 13515529 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCCCAGCCAAGCTCATCAATGGTGGTATtgctggtgttgttggtgtcACTTGTGTGTTCCCCATTGACCTGGCTAAGACTCGACTACAGAACCAGAGACAAGGTCAACAGGTCTACAAGAACATgATGGATTGTCTGGTCAAAACAGTGCGATCAGAGGGGTACTTTGGCATGTACAGAGGTAAGATTCAGCCTACATTGAGTGTTTCACCATGTGGCTTATGCTAACAACAAATGATTATGGACTTTGAGCTATAGTAGCCTATGGCTTCTTCTACTTTGACATTTAAGCTGTGCTTAAATCCACTTGCCTGTGGTTCATGACAGCAGAACTGGTTAACTGGTTTTATGCTGTTCTACAGTAGAATAAAAAATTCACAATGGTTGGATCTATGTAGAGTTTGCATGCATCTATGTAGACATACAAACCACAATGTCCACAATTGTACAGTGGTTACTATTAATTTGCTGCACTTAATTACCAGTTAAATTGTAGACTTTTTATTATCacctacaaaacacacaaaccctattggagcattttttatttttatttatttatttttttttttttttttttttttacatggtagTTCTGAAATGAACTGAACTTGAGGTAGCAGATCTTTGAGCATAACAGCCCATGTTTGTATTGGGTTGTTGCTTGATGTGAGGAATGCTGTTTGTTTGCATCTGtgttttttcatgttacagaCATGGGTCCCCCCTGGGATAGTGAAGGCTAGCCGATTAAGGCGCAGCCACGCTGGAGGTGCTGCAGTGAATCTTGCTCTTGTCACACCTGAAAAGGCCATCAAGCTGGCAGCCAATGACTTCTTTCGTCACCACCTTGCCAAGGATGGGAAGGGGTTGTCAGTGTTTAAAGAAATGTTAGCAGGTTGTGGTGCAGGCATGTGCCAAGTCATCATTACTACTCCTATGGAGATGCTGAAAATTCAGCTGCAAGATGCTGGAAGACTAGCTGCTCAGCAGAGAATGCCTGGTATCCTGGCTCCCAATAAGCTGGCTCAGACCAGCACTGTGCTGAGCCGCTCCTATAATGTAGTGCCAAGCTCTGCTGCCCAAACTATCTCTGCAACGCAGATCGCCAAAGAGCTGCTATACACAGAGGGCATCCAAGGTCTATACAAAGGGCTAGGAGCAACACTTATGAGAGATGTGCCCTTCTCCATTGTCTACTTTCCTctttttgctaacattaaccGTTTGGGTAAGCGTTCTGAAGATGATGTGGCGCCATTCTATTGGTCGTTCATGGCTGGCTGTGTAGCTGGTTCAACTGCTGCAGTGGCAGTTAGCCCATGTGATGTGGTAAAAACCAGGCTTCAGTCCTTGAGCAAAGGTGCAAATGAGGAGACCTACAATGGAGTTCTGGACTGTGTGAGCAAGATCATGAAGAAAGAAGGACCATCTGCTTTCCTGAAGGGGGCAAGCTGCAGGGCACTTGTCATTGCACCTCTTTTTGGAATTGCTCAAGTTATGTATTTTGTTGGAGTTGGTGAATTCATTCTGGGCCAAAGAGCATTTAACCTCCTGTCTCCTTAAGCAAGTCTCCAGAACTGCCTCAGATGAACCTGTGCTGGGGACATgagtcacacacattcatataaagACTAGATTTAGATCGACACGTGTGCTGTCGATTGTTTCCTTAGCCAGTTCCTGGCCTTACTGCACTTCCTGTCTGGTTTGCTCACTCATTTGAGTGGCTGTGGCCAGATTTTACACTTGATGGTAAGGGCTTTTGCAGGAGGTGTGCATGAGATGGTGCTCTACATCCTTCTAGAAGGATCTGTAAACATTTTCCCCTCAGTGAGGGAGGATGGTGTCACTATGGAGGCACTATAATCAAAATGACCcccttttttttgtagtgtctGTTTTGTCAGTCATGTATTTCTGTGTTTGCTGGATTACTCAATGTGTCATTGTACTGATGAAGtccaatatttttaattattttacaagctAGCTACAACAgttctgtgtgggtttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31582 lncRNA upstream 13844 13490161 ~ 13497729 (+) False tshba
XR_003403407.2 lncRNA upstream 137077 13351846 ~ 13374496 (+) False LOC113533310
XR_003403408.2 lncRNA upstream 137763 13351846 ~ 13373810 (+) True LOC113533310
XR_003403409.2 lncRNA upstream 137763 13351846 ~ 13373810 (+) False LOC113533310
TU31025 lncRNA upstream 603479 12855396 ~ 12908094 (+) True G26266
TU31688 lncRNA downstream 110952 13626481 ~ 13629466 (+) True G26848
TU31730 lncRNA downstream 306855 13822384 ~ 13825226 (+) True G26873
TU31732 lncRNA downstream 318710 13834239 ~ 13836347 (+) True G26875
TU31741 lncRNA downstream 357786 13873315 ~ 13873523 (+) True G26884
TU31779 lncRNA downstream 485402 14000931 ~ 14054690 (+) True G26921
XM_026921646.2 mRNA upstream 5569 13495855 ~ 13506004 (+) False tshba
XM_026927279.2 mRNA downstream 55230 13570759 ~ 13578479 (+) True LOC113534455
XM_026927289.2 mRNA downstream 55230 13570759 ~ 13578479 (+) False LOC113534455
XM_026927047.2 mRNA downstream 69563 13585092 ~ 13590794 (+) True LOC113534264
XM_026926971.2 mRNA downstream 69563 13585092 ~ 13590794 (+) False LOC113534264
XM_034309834.1 mRNA downstream 81320 13596849 ~ 13612881 (+) False LOC113537237
XR_004577012.1 other upstream 10277 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 12208 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1676055 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1763298 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2665789 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 5259241 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 5301873 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile