RNA id: XM_034314053.1


Basic Information

Item Value
RNA id XM_034314053.1
length 1806
RNA type mRNA
GC content 0.46
exon number 14
gene id rad18
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15505644 ~ 15568428 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAAATGACGTCAGTGCAGGACGTGAAAAAGTGCGCGGGGAAATTTCTATACCTGTTTCAGTAACAGTGTTAGCTGAGTGCATATCGCGTATTTTAATAAACCCAGTTAGAAAATTGGGAAAAATGTCTCATTCAGTCGAAGCGGATTTACCACCGCACTTGTCATGCTTGAAAaataTTGACACTTTGCTCCGATGCCCGATTTGCTTCGACTTCTTGAATATATCCATGATGACGCAGTGTTCTCATAACTTTTGCTCCCTATGTATACGGAAATTTCTTTCCTACAAGTTGCTGTGTCCTCTTTGTAACACGCCACTCACAGAACAAGAGCTGAGGAACAACAGACTACTGGATGACCTTGTTCAGAGCTTCCAAGCTGCGAGGCAACAGCTGTCTCAGACTAATTTTGAGTCACCTCCGATCTCCCCCAAGACCCCGACAATGGCTGTCGGAGGAAAAGCAGCGAGGCAGAAAGCCCTTAAAAAAGAGGGCACTATTCTGACTCACTTCTTCCAGAAACGAGCCCCAATCAACTCCTCCATAGGAGCACAGTCTGGCTCTAAGGGTCTGCACCCAGTGAAACAGGAGCccatggatgtgtgtgtgcagggagcCCTCCTGCCAGAGAGTGCAGTGACTGTGACCACAGTAGTGAAAGAAGAGAAGCTGGACATGCCTGCTTTTCCCTCCACATCGCAGGATATTAAACCTGTGGCCAAAGtggagtgtcCAGTGTGTGGAGTGGAAGTGTCCCAGCAACATATTAATAAACATCTGGATACATGTCTGACCAGAGGGGAGAAGAAGGATAGCCTTAGAAGGTCTGACCAGCTAGGCTTTTCCTGTTCTGCATTTATAGACCCCAACTCTCGGAAGCGCAGGCCTATGGCTAAGCTGGTGTACACCCTGCTGACAATGGTGGAGCTAAAGAGAAGACTGAGAGAGTGCCATCTGTCCACACAAGGCTCCAGAGAGCAGCTCATCCGACGGCACCAGGAGTTCATACACATCTACAACGCACAGTGTGATGCACTCAACCCCAGATCAAGTGAGGACATTGCTAGAGAGGTTGAAAACAATGAGAAGATGAGGAATCAGCTGGAGAGTAAAAATAAACCTGCAATACTCATCACTAAAAACCACACAGTCACTGAAATTGAACAGTTGCACTCAGATTACCGGAAACAGCACAGTGGTGAGTTTTCCCGTTTAATTGCTCAGGTCAGAGGTCGTTTGGAAAATTCCAGGAGAACACAAATTAAGCAGGAAGGAGGGAAATCAGCAGAGGAATTGTGTTGCAGTGCTGATGACACAGTAGTCCAAAACACACCCCAGCCCCCAGGTTCTTTGACATTGGAAATTGCCACCAATGAGAAGACTTCTGTTATGGAACTTGGGTCGAGGTCACCAAGCCCTACTCTCAGTGAAGTGTCTGTCAGCAGCTCCATTTCTGATGTTTTCAGTTGAAGACCAGAAGGAAGCTACCTGTctaaATCACTGATCAGACCAATGGCGAATAAAATTCACCTGGCAGAAAAAGCTGACTCGCTGAATGGAAAGGATATGGAAGAAGCAGATTTGTGTCtggttgtgtttatttttgtgttgcaTCAGCTTTATCTAGGAGAACTTTAACATGTAAATTTATAAGCCTCTGTCTGagccaaaagaaaacaagaaggaTCAGGACTGTGGTCTCTGTGGTGAACAACAAAAAAGGAGGAGATGCTAAGTAGTAAGCACTGCTCACACCAAACTTTTGCCTCACCGTTTTTTCTTTACTGCGGCTTGGCACATCTTTT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10627 RAD18; E3 ubiquitin-protein ligase RAD18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32946 lncRNA downstream 7823 15503832 ~ 15504043 (-) True G27953
TU32928 lncRNA downstream 33858 15477790 ~ 15478008 (-) True G27935
TU32925 lncRNA downstream 39319 15472341 ~ 15472547 (-) True G27932
TU32884 lncRNA downstream 127776 15382914 ~ 15384090 (-) True G27904
TU32777 lncRNA downstream 265513 15244315 ~ 15246353 (-) True G27801
TU33196 lncRNA upstream 46597 15615025 ~ 15616748 (-) True G28173
TU33208 lncRNA upstream 113142 15681570 ~ 15682044 (-) True G28182
TU33217 lncRNA upstream 152339 15720767 ~ 15725456 (-) True G28191
TU33234 lncRNA upstream 218425 15786853 ~ 15788153 (-) True G28207
TU33280 lncRNA upstream 360613 15929041 ~ 15933858 (-) True G28232
XM_034314036.1 mRNA downstream 16657 15462073 ~ 15495209 (-) True oxtr
XM_026919181.2 mRNA downstream 41694 15462073 ~ 15470172 (-) False oxtr
XM_026919171.2 mRNA downstream 41707 15462073 ~ 15470159 (-) False oxtr
XM_026917581.2 mRNA downstream 233153 15276905 ~ 15278713 (-) True gpx1b
XM_026929254.2 mRNA downstream 472263 15033446 ~ 15039603 (-) True nprl2
XM_026919148.2 mRNA upstream 49923 15618351 ~ 15727114 (-) False srgap3
XM_026919138.2 mRNA upstream 49923 15618351 ~ 15727114 (-) True srgap3
XM_026929869.2 mRNA upstream 183785 15752213 ~ 15756341 (-) True cish
XM_026920628.2 mRNA upstream 194108 15762536 ~ 15775878 (-) False LOC113530515
XM_026920619.2 mRNA upstream 194108 15762536 ~ 15775877 (-) True LOC113530515
TU32920 other downstream 42637 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 50865 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 212847 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 635876 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1704527 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1945284 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 2380729 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2502559 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 3008796 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile