RNA id: XM_034314254.1


Basic Information

Item Value
RNA id XM_034314254.1
length 2155
RNA type mRNA
GC content 0.44
exon number 9
gene id stx16
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3938000 ~ 3958819 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCCACGCTTTTCCCGGAAGTGTCCATGACGCTCTTCTCGTTTGTAGCCTCTCACTATTTCTTCAAATGTCTTTGTTCAAAGCGGATATGATCTCATGTTTACGTATTACACACCTCAGTGGCCCTAAAGTGGTCTATTGACGCTCTGAGTTGAAAAGGGGACACTAGACGTAGTCTATTATCGttctttattattgttttagtgTAGAAACCGAGGCTAGTGAGACTACACCGGACGCATTGTCAGTCGGCGcgctgtcagtctgtctgtctgtctgtctgctctgcTGGAGGCTAAACTCGCTAGCACTCGGTAGCTGCCTGCCAGAATCAGCAGACAGAAAGCGAGCCAGAGGCAGTCAGCCATTATTTGATTGCGGTAACCTGCCCTCTTATGTACTGAAAGTAGTCATGGCAACTAGGCGCCTGACCGATGCCTTCTTATTAATGCGGAACAATGCGATCCAAAACCGACAGATATTGGCTGAGCAAGAGTATGATGAGCTGGTGGATGATCGGATGGCTCTGGTGTCTGGAATTAGTTTGGATCCAGAGGCTGGCATCGGTGTCACCAAAAGGCTCTCACCCAAATGGATAGAGGGTGTGGATGAGATTCAGTACGAGATCACACGTATACGGCAGAAAATGAAGGAGCTGGCAAGTCTGCATGATAGACACATGAACCGGCCGACACTGGATGACAGCACCAAGGAGGAGCATGCCATCGAGATCACTACCCAGGAAATCACACAGatgttccATCGTTGTCAGCGTGCAGTGGTGGGGCTGCAGTCGCGGTCTGGTCACTGTACAGAGCAGGAGGGGAGGCTGCTCAGAAACGTCATCTCCTCATTGGCTCAGAGCCTTCAGGAGCTCTCAACCAACTTTAGACACACACAATCGAGTTACCTGAAACGCATGAAGAATCGTGAAGAAAGGTCTAAACACTTCTTTGACTCTGGGCCTTTgatggaggaggatgaaggCATAGCACTACATGACAGGggtTTTACAGATGACCAGCTTGCTCTGGTGGAGCAAAACACAGTAATGGTGGAAGAGAGGGAGCGAGACATCCAGCAAATTGTACAGTCCATCTCTGATCTTAATGAGATTTTTCGAGACCTTGCTAGCATGGTGGTAGAGCagGGTACAGTTCTTGACAGAATTGACTTCAACGTGGAGCAAGCCTGCATCAAAACGGAGGATGGACTGAAACAGTTACAAAAGGCTGAacagtaccaaaaaaaaaatcgaaagaTGCTGGTGATTTTAATCCTGTTTGTCATAGTCATCATTCTAATCCTTGTTCTGTTTATGACAAAGTTCCAATGATGCAGTTTATGTGTACCCAACTGAAGAAGCAAGCTCTTTTGTGTGAACTTCCTGTGAGCCATCTATTCTCACATAAACGCAATATAAAGAAACAGCGCCCACTAATGTTCTTCTTGTGCAGAATTTGGCGTTTCAGATAAATCCAGTGACATGAAAAGGGTGCAGTTTCCCCTCCTGTTACACAGGCTTCAAAGTAAGCCAGTCTTTGTGCTTTAACGAATTGTTTTCCATAACTGTTTTCAAGTTGTCTTGTTCTCAGTAAGGACTGGATGTGTAAGTAAAACGACAGCTTCTTCTTTAATACTGTTGCTACACAGAAAAGCACCTCTCAAATCCACCCAAAAGCTAGAAGCCTagttttgtgtgtctttttcttatccaaaagtttctttttttgcttccatTCCTTGTCTTCAGTTTCATTTGTAAttaacaacagcagaaaacaaagaaagatgCAAAAACAACAATTCTTTAGTTGTTGGCCCTTTAAAAAGGAGTCCATCGTTCCTGGTTATAATGTGCACACTACAGCATGCTTTCACACAGTCCCTGAACTTGATTCCAGAATTTGCTTAATGAGGAGCAAAAACAGGGAGATACCATGAAAAGTGGAACATTGTTCTAGTAGTTCAGAAACATGAGGAAGTGTTTCATAAGTGACCAAATGTTCTCTTGATCATGAGAGACTTGTGACCTGAATAAATAGCTTTGGTTCAGTCTGCTTGGGGTGTTGGCATTTTGCCCTTCTCAGTTGAATAATGGTTTTTATAACCACACACCtgtgtgatttattaaaatttagaTTACAAATGttaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25470 lncRNA downstream 5432 3932136 ~ 3932568 (-) True G21358
TU25413 lncRNA downstream 152446 3785140 ~ 3785554 (-) True G21306
TU25404 lncRNA downstream 222957 3713299 ~ 3715043 (-) True G21303
TU25222 lncRNA downstream 281328 3656395 ~ 3656672 (-) True G21153
XR_004580294.1 lncRNA downstream 386049 3549631 ~ 3551951 (-) True LOC117599952
TU25493 lncRNA upstream 35061 3993879 ~ 3999636 (-) True G21377
TU25498 lncRNA upstream 50313 4009131 ~ 4009340 (-) True G21382
XR_004579415.1 lncRNA upstream 85746 4044564 ~ 4062409 (-) True LOC113545971
XR_004579416.1 lncRNA upstream 85746 4044564 ~ 4048218 (-) False LOC113545971
TU25521 lncRNA upstream 118310 4077128 ~ 4077827 (-) True G21400
XM_026945622.2 mRNA downstream 92276 3839963 ~ 3845724 (-) True tubb1
XM_026945431.2 mRNA downstream 114717 3817517 ~ 3823283 (-) True LOC113545812
XM_034310822.1 mRNA downstream 115784 3817517 ~ 3822216 (-) False LOC113545812
XM_026945665.2 mRNA downstream 132391 3788943 ~ 3805609 (-) False vapb
XM_026945664.2 mRNA downstream 132402 3788470 ~ 3805598 (-) True vapb
XM_026945608.2 mRNA upstream 45804 4004622 ~ 4008577 (-) False si:ch211-181l5.2
XM_026945607.2 mRNA upstream 45804 4004622 ~ 4008577 (-) True si:ch211-181l5.2
XM_026945452.2 mRNA upstream 64972 4023790 ~ 4025978 (-) True si:busm1-52i16.2
XM_026945639.2 mRNA upstream 75253 4034071 ~ 4039284 (-) True cldn10a
XM_026945430.2 mRNA upstream 400302 4359120 ~ 4365171 (-) True prelid3b
XR_004579840.1 other downstream 160012 3750018 ~ 3777988 (-) True rab22a
XR_004580246.1 other downstream 201114 3717715 ~ 3736886 (-) False npepl1
trnaf-gaa_13 other downstream 900644 3037284 ~ 3037356 (-) True trnaf-gaa_13
TU24006 other downstream 2115438 1812759 ~ 1822562 (-) False slc9a7
TU23548 other downstream 2900426 1028859 ~ 1037574 (-) False slc48a1b
TU25557 other upstream 297850 4256668 ~ 4257087 (-) True G21434
trnaf-gaa_14 other upstream 373281 4332099 ~ 4332171 (-) True trnaf-gaa_14
XR_004577457.1 other upstream 488549 4447367 ~ 4447479 (-) True LOC117596284
XR_004577458.1 other upstream 499518 4458336 ~ 4458447 (-) True LOC117596286
XR_003404665.2 other upstream 854457 4813275 ~ 4902011 (-) False obsl1a

Expression Profile