RNA id: XM_034314801.1


Basic Information

Item Value
RNA id XM_034314801.1
length 4567
RNA type mRNA
GC content 0.54
exon number 23
gene id wwc3
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20894023 ~ 20948637 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctTCCCAATATGGAGTCTGTGGAATGAAATATGGCAGAAGAGGGCAAACATGGTGGACCGACGCCGAGAGTCATGAGAGCGCCGCGAAAGTTTTTGAAAGGCGGATGCCGGACAGTCTGCGTCGAGTTTAACCTCGTTTGTTTTCCAAGTCGCGCTGTTTCCTAGAGTCGACGGGAGTAAGTCATTGGTAATGCATTAGGAAACCTGTTGAATTGTGCGGAGTTTTTGGATTagaggagagggggagaggCGCAGGCGAGTCCCCCGGTCCTGCACCGTCGCGTCCCGGCGGCGCTATGCCGTGGCTCAGCGGCTCCAAGCGGAGAGAGAGCTCGGAGCTGCCGCTGCCCGCCGGCTGGGAGGAAGCCCGGGATTACGATGGCCGAGTGTTTTACATCGACCACAACACCCGGCAGACTTCATGGATCGACCCGAGAGACAGGATTACTAAACCCCTGACGTTTGCCGACTGTGTGGGTGATGAGCTTCCTCTGGGCTGGGAGGTTGTGTATGACCAGCAGATTGGGGTTTACTACATCGACCACATAAACAAAACCACGCAGATCGAGAACCCGCGGACCCAATGGCGCCAGGAGCAGGAGCGCATGCTGAAGGAGTATCTGGTGGTGGCGCAGGAGGCCCTCAATGCCAAGAAGGAGATGTACCTGATCAAGCAGCAGAGGCTGGAGCTGGCGCAGCAGGAGATGCAGCTCTTCAACCAGCTTAGCCAGGACGACAACCGCTCCGTCACCAGCTCACACTCTGGCTCTTCTTCAAATGCAAAATATGACCCTGACCAAATCAAAGCGGAAATCGCCTGTAGGCGTGAGCGGCTTTCTAGGCTCAAACAGGAGCTGGCCCAGATGAGACAGGAGCTGCAATTCAAGGAAATGGGAGTAGAGACACTACAAGAAATTGACCGGAAGATGTCTAGCAGTCAGACGAATTATAAACTGGATGAAGCGCAGGCCATCTTTAATGAACTACGCAGCATAAAGAAGGCTATCAGCTCGGGCGAGAAGGAGAGGCAGGACCTCATCCAGAGCCTGGCTAAGCTGACGGGGAATTTTCACAACCTTTCCATCAGTGACTCTGTAAATGAGGTGGCCACCATCTCCGTGGCTCCGGGAGACTCAGTCAGCGGGCAGCAATACACCGACGCCGGCTGTCAGACTGACCTGATTGGAGAGGATTCGTCCCCATTAGTTGACAAAGTCAGGCTCACCTGGCAGTATGAAGAGGCCAAGAAAAAAGTGTCCAGCATCCAGCACCAGCTGGCCAAGTTGGACAGCGAGAGCTGGTCAGGACGTGCCGAGGCCGATCGGGATCGTGACTGTCTGCAGCTGCTGAAGGAGAAGGAGGCGCTCCTGCAGGAGCTGACCCTCCTCAGTGAGCAGCATCACCCCCCGGAGGTGCTGGTCcagctggaggaggagagacaCAGGCTGGAGGAGGAGGTGCAGAAAGCCCAGAGCTCACAGAGCCAGGGGGCCAACCAAAGgatactGCAGCAAGAGAAGAGGAACGTGTTACTGAGACAGTTGGAGGAGGCGACCCGCATCACAACCTATCTCCACTCTCAGCTCAAGAGTCTCTCAGCCAGCACCCTGACCATGTCCTCCAGCAGCAGCCGTGGTTCTCTGGCCTCAAGCCGGGGCTCGTTAGCATCTAGCCGCGGCTCCCTGAGCTCACTCAGCTTTACCGACATCTACGGCGTGCCCCAATACGAGCGCCAGGAGGCCTGTGTGGACATTCCTGAGCCCACCTGGCGATACCCCATGCCTGTGGAGCCTTCCTGCAGAGACGTCTCTTCTGTGCTAGGGCCCAAACGGGTCCATGAGGCTCCGCAGTCTCTCACGTCCCTCTCGTCGcgctcttctctctcctccctctctccccccaGCTCTCCCATGGACACACCCTACCACTCGGGCCCTCCGGACTGCCCCCTAACACAAATGACTGAGGAGTACATGGAGCTAGCCGGCCGCGGCCTGGTGCTAGAGGGCCTCCGGGGCCACACTCAAACCCACCAGGTAACCGCTGTTCCAGGAGAAGGAGAGGCAGGAGGCTCTACTACAGCTCACCTACTGGAGGCCAAGGGCAGCAGAGACGGTGGTGTTCAGGGCCTGTACAGCTCTGCAGgtgcaGGAGTGACTCTACGCTCTAACAGTGTGAAGCGGAGCGGCCGCCGCAGGGCTCGCCGCGTCTCTGCCGGCATGAGTGAAGACGTGTTAGCCACGGATAGTGGAGTGTTTGAAGCCTGGAGTAGAAGcaggacagaggagacagaCGAGGTCATGCTTAACCGAGATGCAATCAGCACTCCAGAATCCCCTCAGGTCCAGCTGGGACTCCTGTATGATTCCAGTTCCATGTCTCTGCTGCTTCACGTGCTCCAAATGAGAAATCTGAGCAAGGCCACTGTGAGAGATGGCTACAAAGTcTTTGTGAAGGTGCATGTGCTGCCCGTGGACTCCAGTCGGCCATGCACGTACTACTGCTGCAAGGCCCAGGAGCCACGCTCAACTCTCAGCTTTAATGAGGGTTTCCAGATCCTGCTGCCTGCAGGGGGCGCTGTCTCCCACGCCCTGCATCTGCAGCTCTGTGCTCTTGGACCCCTCGGGCACGATGAACTACTGggcTCAGCTCAGGTGCCACTAGCTGATTGTGCGAGCAGCACGGAGATGTTGTTCCAGTGGCACCGTGTGCAGCTGCTGCAGCAGGAGAACCACAGGGCTGAGCCTAGAAGCCTGTGCCAACCTGGACACAGTGTGgacgaggaagaggaggaggatgaagagcgTAGCAGAGCTCAGGTGTCAGCGGTGGCTCAGCTGAACGAGGGGAAGAGAGAGCTGGATATGAGTGAGGAGGAGCTCGAGAGGAAGGAAGAGCAAGGAGAGGCTGTGTCTGAGAGGAGTTGGCAGGCTGAATCAGTGGATAGTGGCTGCAGTAACAGCACAGCGTTCGCCTCTCCGTGTCCCGAGGGTCTGTGTGCTGAGGGCTTGTGTATAGCCACCGGGGGGCGCTGTGGCCCTCATTCAGACAGGTCTCTCATAAAGGTTGACAAGGCAACCAACACAGAGCTAATGCGAATGCAGCCTAAGGAGAGGCCAGGGCGATATGGACACGGCCCCCCATTCCTGCGCACAAGCACACTGTCAcgctcacacacattctcacctgGAGCCCGCAGCCAGTATGTCTGCAGGctgtaccgcagtgacagtgacagctCCACTCTACCAAAGAAGTCCCCCTTTATCAGAAACACTCTGGAGAGAAGAACACTGAGATACAAACAGCCTCACCGTTCCTCCCTGGCTGAGCAGCCCACCCGTACCTCCCTGGATCTGGAGCTGGACCTCCAGGCGTGCCGCACACGGCAGAGGCAGCTGAGTGAGGAGCTGAATGCTCTGAGAGAGCTGAAGATGAGGTTGGAGGAGCCGAGTCAGAGCGTTCAGGGGCCTCAGAGTGTCCGTGGTCCAGTGGATCTGCCTCACTGGGCCCTGAGGGACGAGCGCTTCCGCAACCTCCTGCGAGAGGCCCACAGACAGgCGATGCAGAGCAGACAGGAGCAGAGGCAGGAGGAGGCAGCTGAGAGGAGGTTGCGAAAGGCCTCTAAAGAAGTGCTGCAGATGAGGGGCCAGAGCCACAAAGAGCCGCTCCCTGTGCACACTTTCAGAGAGAAGATGGCTTTCTTCACTAGACCAAGGTTCAACATCCCACCGCTGTCAGCCGACGACGTGTGACTCCCCTCCTGGACGCCATACTATCAGATATGaagtatttgtgtttatttttttgtattcatgCCCATGAAGTAATTAGAGCAACCGTATATTTCAGCacaaagaacaaaatgaaaattatgcaaatttCAACATTCAGCTGCAAAAaggtgtgcgtgcgtgcgtgcgtgtgtgtgggtgtagatGTGAGCAAGTGTGTATGCACGCATCCGTGCACACACccatgtgtgtgattttactATGTTTTGTGTAATTATTGACATCCTGACTGATTTCCCTTCCTGTTGTAGGGAAACAGTTCTTTTATAAGAGAAGAGATGATCTTTTACTCCTGTACAATGTACTTCTGAAACTGTCTGTGCTTATGTGAGGCTGGAAGACGGGAACAAAGTCAGTTTAGACaaattcactgtactgtaacttATTTTATAGTACTTTTCCTTGAAGGAAATAAAACTGCTTcctgctttttttaatgtattttataaagcGTAAAACAAATAGCACTTACTGTAAGTGTTTGACGTACAGTAGAATGAAACTTTCAGCTGATTTTGTTTCTGTTACCTGATTGTTTGGTGTTATTTGCCTAAAGTGTCACTTTTTTTGATCCACTTTTATTACAGTTGTCATTGTCATTTGTgctattgttttattaaaaatattaatattattacttgTACTTTTCAATATATAGATGACTATATGAAACactgttttcagatttttttttttttaatggcgtCTGTAGGAACATCTGCAGTGTTACCTCTTTTGTAAAGATCAAAACCATTAAACGGTAAAAGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36246 lncRNA upstream 4313 20835487 ~ 20889710 (+) True G30715
TU36252 lncRNA upstream 42347 20848491 ~ 20851676 (+) True G30721
XR_004579663.1 lncRNA upstream 112115 20770555 ~ 20781908 (+) False LOC117599214
XR_004579661.1 lncRNA upstream 112115 20770595 ~ 20781908 (+) True LOC117599214
XR_004579662.1 lncRNA upstream 112115 20770595 ~ 20781908 (+) False LOC117599214
TU36280 lncRNA downstream 14795 20963432 ~ 20963641 (+) True G30747
TU36341 lncRNA downstream 144977 21093614 ~ 21093816 (+) True G30791
TU36879 lncRNA downstream 436369 21385006 ~ 21385342 (+) True G31260
XR_004580180.1 lncRNA downstream 453605 21402242 ~ 21406386 (+) True LOC113526220
XR_003402742.2 lncRNA downstream 454836 21403473 ~ 21406386 (+) False LOC113526220
XM_034311515.1 mRNA upstream 13556 20876945 ~ 20880467 (+) True cldn34a
XM_026924733.2 mRNA upstream 14498 20876945 ~ 20879525 (+) False cldn34a
XM_034312253.1 mRNA upstream 22327 20866654 ~ 20871696 (+) False shroom2a
XM_034312244.1 mRNA upstream 25763 20831491 ~ 20868260 (+) False shroom2a
XM_026913045.2 mRNA downstream 33895 20982532 ~ 20988867 (+) True ttc22
XM_026918107.2 mRNA downstream 50846 20999483 ~ 21011730 (+) True wdr78
XM_026918093.2 mRNA downstream 66201 21014838 ~ 21017867 (+) True insl5a
XM_026923022.2 mRNA downstream 460117 21408754 ~ 21448083 (+) True jak1
XM_026923012.2 mRNA downstream 460117 21408754 ~ 21448083 (+) False jak1
XR_003403752.1 other upstream 783798 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 1357009 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 2067103 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 2076548 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4711720 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 66221 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 1649704 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2527314 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3071741 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3704353 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile