RNA id: XR_003402742.2


Basic Information

Item Value
RNA id XR_003402742.2
length 2322
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC113526220
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21402242 ~ 21406386 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAACTTTCCATGTATGACTTTAACCCCCTGTGCTATCTAGGAATGCACTTTTACGTACAGATCTCAGTGATCTCACTTCAGGGCTCACTTCATTGCATTCCTCCACTGCCATTTTGCAGGATTCATGGTAGAATAACAGGTTAAGTTGACTCTAAGGAAGAAAGCGCACTTGTTGATAGcagtggtgcaaaaaaaacGTCAAACCTCCAAACGTcaccgtgttttttttttttcttttttttctagatgtTTCACATGAAATCAGGTCTCAGTTTTTCTAATTGCGACGCATATCATGTATTCGAGAGGAGCCTGCTGAACTGGGCAGGTGACGTCAGAAGTGGGCAGATGTGCGCGCGACGCTCTTCCAGGCACGTGCGCTCGTTGACAACATTTTataccaggtgattttttttattttttttattttttttgtttgcttttatagCCTTCTACAAGACAATAACTAGAGAATTTTCTCCACACGAAGAGCGCTGGTGAGCTTCGGCACCCGGAAGCctgctgattttattttgtcacatgGCTCCGAGATTttcaataacaacaacaaaaatggcGACATATCACGTTGCGTTGCTCGATGTGAGCTTGCTGCGTCATTAAAAGATATTCCCGTAAACACAAGCGAGAAGCAGGAAAGAAAGCCAGATAGGTTAGGTGATATTAGGTCATTTTGGCAGCCACTGACGCCGTCTCGTGACAGCAAAAACCCCGACGAGCTGATCGACTTGTTTACAAGAAGAGATTTGCGCGGAGGGAGGGGCGCGAGTGGGCGGAGCTTTGCCGAGCGGCAAGGCGAGTGGACGAGCCGGAGAAGACGCGCCGCGGAGGGCGGAGCCTACAGGATAATAGCAAGCTGGACGTGAAAGAGGGCGGAGGGGTTTGTATGAGGTATCTGTTGGAGTGCTGTTTAACTGTTGACGCATTAGTCTTATTTTTTGTGATACTTAAAGtctctgaataataataataataaaaaaaaagactttgagAGCTTGAGTCATTATATGTATCTTGgaaatatttaattcatttatttagtaatcCATGTCTAATTAGTGGTCTGTATTGACTAGAGAATTGTCTTTACAACATAGATCCATGATCATGATATGATAATAACATagtaacacaacacaacaaccCTGATTAAATAATAGCTtgataatattttttctttcaatgtttattctgagtgtgtgtagcaTGTCACTGCTTTATTTATGTTGTGCTTCTTATATTCTGTTTGCTGCTTAACAATGAATAATGCCCATGGCTCATATTAGCTTTGGGTAGCTGAGACAGAAAACACCATGTTAAATAACCACCTATGAATACAGCTTTGTTCTTGGGGAACAGTAAAAAGACAAAACCACTTCTCATGCCTGGGGATGTTCCTGTTAGAAAGTGTATGTAAACAGGTATGTGTGGAAACAAGACAGGGAGGTAGTATAATAGAGGGAATTCACTTATTAGTTTTAGTTAGCGTGAAAAGCAGTTGATTTATACTTCACCACTTTTCGTTTAATTCTCGAATCAAAATGAcctgtgtaatataaatataaagtggaTTTGTACTGTTTCATGTTATGTACAGGTAATGGATCAAACACATTAAGTTTCATGTTGAAAGTTTTTTTCTAGTATggtaaataaactttaaataaacaaaaaattaaaatgggAAATTCTGACTTAAACAGAACACAAGGATTAAATACATTCTGTATGAAATATtctactttttaaatgaaataagcaCAGTAATTCTGCATTTCTAAAATGTATACTTggactttcttctttttctcttttgaatttttaaatattgaattaGTTTACATTCACTTTAATCCTGTCTACAGAGGTGGTTTGTTATTTCCCGCAGTCGTATGTCTCCTGTGCGTAAGTATGATTTCTCATGATGTTTTCAGTATGGCTGAAGGTAAGGTATCTGATGGAGAGGACGGACCGGACTTGGCTCTTCTTGATGTGACAGGCTGCCCTTGTTCAGTTATCACAGTGCTGATGCTGTCCGTCTTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTGACATCTGGTTCTTGTGAAGAAGCCTTTCCTATCTTAACAAGTTCTGAATGGTTTGATTGTTGCTATTAGTTATTAGAATTAGTTAACCTAAACTAAATCTGAAACGTAGTCATTTCTAATACTGCACACATTCTTTTGTATGTGGTTTCAGTTGAATTCAAAAATACCATTCTGTATTGCTATGcagatgtaaaataaaaggcTTCATACTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36879 lncRNA upstream 18131 21385006 ~ 21385342 (+) True G31260
TU36341 lncRNA upstream 309657 21093614 ~ 21093816 (+) True G30791
TU36280 lncRNA upstream 439832 20963432 ~ 20963641 (+) True G30747
TU36246 lncRNA upstream 513763 20835487 ~ 20889710 (+) True G30715
TU37020 lncRNA downstream 202847 21609233 ~ 21612878 (+) True G31384
XR_004580201.1 lncRNA downstream 229798 21636184 ~ 21642350 (+) True LOC117599889
TU37225 lncRNA downstream 420112 21826498 ~ 21826735 (+) True G31565
TU37227 lncRNA downstream 424340 21830726 ~ 21830939 (+) True G31567
TU37381 lncRNA downstream 741812 22148198 ~ 22148470 (+) True G31693
XM_026918093.2 mRNA upstream 385606 21014838 ~ 21017867 (+) True insl5a
XM_026918107.2 mRNA upstream 391743 20999483 ~ 21011730 (+) True wdr78
XM_026913045.2 mRNA upstream 414606 20982532 ~ 20988867 (+) True ttc22
XM_034314804.1 mRNA upstream 454836 20894025 ~ 20948637 (+) False wwc3
XM_026923022.2 mRNA downstream 2368 21408754 ~ 21448083 (+) True jak1
XM_026923012.2 mRNA downstream 2368 21408754 ~ 21448083 (+) False jak1
XM_034314527.1 mRNA downstream 377406 21783792 ~ 21795509 (+) True si:dkey-148h10.5
XM_034313266.1 mRNA downstream 563588 21969974 ~ 22034090 (+) True dock7
XM_026917138.2 mRNA downstream 642130 22048516 ~ 22101105 (+) True kank4
TU36319 other upstream 386026 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 1293248 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 1866459 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 2576553 18774770 ~ 18826920 (+) False G29569
XR_004579462.1 other downstream 1191955 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2069565 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 2613992 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3246604 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 3246799 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile