RNA id: XR_003403164.2


Basic Information

Item Value
RNA id XR_003403164.2
length 1861
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC113530672
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18464884 ~ 18467320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcgCGCTTTTCTTCGCGTGAAATAACAAATTGGGCCAATCAGAACGCAGTGAAGTTGGCTCTCAGAAGCTGCGAGTGAAGGAGcaagtgAAGGCCCAGTGCTGGTCCACACATACCATCTTCATCCGACCTACAGAAGGAATGGTGGAAATGAGTTCATCCGAATCTGGCTGCCATGACACCACCTCAATggttgtggtggctCCAGagcgggaacactgggtgcaggGTAAGGACACAGCCTAGACGAGATGCCAGTCTATCGCAGAGCATGCTGAAAAGGCCACGAAACCCTAAAATGAAAACACTCTGGGCTGTCTGAAGAGCTGAGTCACTGTGTGTCTTCAGACGAAGACTGAAGACGTTCCTCTTCACTAAACACTTAAACAAGCACTAAATCTACACtgcttgtttaaataaaaaacacttgtACTGTTTTCTTTGCTGCTATGTAAAAGAGTTTTAGCCTTATGGTATTCTTGAATActgacctatttgtactagTGTGAGGACATCGTTTTCAACAGGGACTACAAAACACTTCTGgaagtctctctggataagggtgttgTAGATGTTGCTGCTTACATCTGGGTGACTTTTGACCCACAAAAACCTCGTCATAGGCTTGACTGGCGCTTATGTGCCTAAACCCAAATATATTGATATGtataattttcttctttttctgattgAAGTGGCCACATGAAGTCTCTGAGCTCAGAACAGTATTTCTGACTGTATATGAATATAGTATGAAGCTTTCACACACATGTTCTTACACAGTGGCACCATCATCTGTCCACAAAAGGAATTACAGATGGTAGGAAAGTAGGTAACCAGCCACTTTCCCAGCCTTGCCATGCAATacttattttaatctgttttccTGGTGCATCGTATCCGAATTAACTCATCATTACTAACCTCTTCATGAATGTTAGAGCAGGtcacattaaaaatgtacaatgtgttgGGACTACAGAAATTGGAAAcacctttatttgtcacatacattatagtgaaattattttctttgccTAGCCCAGCTTGTTCAGAAGTTGGGGttagagcacagggtcagccatgatgtggtgcccagcagtggcagcttggcagagCCAGGGCTTGAACTCCTACCTTCTgctcagtaacccagagccttagcCACTGAGCCACAACTGCCCTGAGACCCCAGCAGCCAGCTGCACCAGCTGAACATAAATCTGATTGTAAGACACTTAAGGTACATCATAACTAGTCATGAGTAAGTGATCGTAATCAAAGTTATGTGATTTGGCATCACCAGCCAATCTGAAACATGATCTGACATAAAGTAAAGCAAATTCTTCATCTCTTGTAACTTAACCTGCATTTGAAAACACTGAAAGATATAACAAATATAGCTTTACATTAATAGTGAAgtatttcaaataatttgtGGCCTTGCCAGAAAAATCAATTTGATCTTTAACACTTTGTGCTAACCAAGGAAAACTTCCCATCCCTGATACAGCACAGTAGCTCTATGATCCAATACAGAATAAAACCCTACCATAAAGCATTAAACCAGCATTAAAATGAGAATGGTTCTGAGTAAAATCAGGTTAAAGTGCATCAGCATTCTagtataatttatgtatttaactaTATGCTCTTTGAGTGAGCAGTAAGTGTGTACTGTTCTGGATATTAAGCGCTGATACTGAAATGAATCAGAAAACTATTTTTCATGTAGAAATGTTGCTATTTTAAGGACCATTTAGCTTTCCAACTTCTTTGTTCTACCTTGAAAGGAGAGGATCTGCTTATTGTTCTAGCACATGGTACACACTCACcagtgcaaaaataaatctGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403713.2 lncRNA upstream 104849 18358202 ~ 18360035 (+) True LOC113536874
TU34548 lncRNA upstream 379240 18083719 ~ 18085644 (+) True G29281
TU34336 lncRNA upstream 700111 17694754 ~ 17764773 (+) True G29106
TU34335 lncRNA upstream 776149 17683821 ~ 17688735 (+) True G29105
TU34246 lncRNA upstream 929533 17530575 ~ 17535351 (+) True G29036
TU34849 lncRNA downstream 221333 18688653 ~ 18691007 (+) True G29561
TU34870 lncRNA downstream 351405 18818725 ~ 18835721 (+) True G29569
TU34910 lncRNA downstream 466281 18933601 ~ 18948514 (+) False boka
TU34992 lncRNA downstream 582906 19050226 ~ 19050438 (+) True G29640
TU34993 lncRNA downstream 583504 19050824 ~ 19051043 (+) True G29641
XM_026930929.2 mRNA upstream 50929 18298382 ~ 18413955 (+) True LOC113536767
XM_034300733.1 mRNA upstream 53701 18298375 ~ 18411183 (+) False LOC113536767
XM_026923802.2 mRNA upstream 317967 18139055 ~ 18146917 (+) True LOC113532395
XM_034311072.1 mRNA upstream 317967 18139055 ~ 18146917 (+) False LOC113532395
XM_026923793.2 mRNA upstream 317967 18139241 ~ 18146917 (+) False LOC113532395
XM_034311144.1 mRNA downstream 133639 18600959 ~ 18614825 (+) True dzip1l
XM_034314518.1 mRNA downstream 374117 18841437 ~ 18857162 (+) True LOC113527312
XM_034299801.1 mRNA downstream 391119 18858439 ~ 18917006 (+) True farp2
XM_034298244.1 mRNA downstream 465363 18932683 ~ 18948737 (+) False boka
XM_034298238.1 mRNA downstream 465363 18932683 ~ 18948737 (+) False boka
TU33403 other upstream 2282581 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 3170530 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 3273228 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 4963588 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 4965519 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 307450 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 350082 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 1067121 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 1642810 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 2547538 21014858 ~ 21017447 (+) False insl5a

Expression Profile