Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403381.2 |
| length | 691 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC113533008 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 11957228 ~ 11974989 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003403548.2 | lncRNA | upstream | 151769 | 11803590 ~ 11805459 (+) | True | LOC113534932 |
| TU30103 | lncRNA | upstream | 165103 | 11732424 ~ 11792125 (+) | True | G25452 |
| XR_004579590.1 | lncRNA | upstream | 269004 | 11668819 ~ 11688224 (+) | True | LOC117599151 |
| TU30080 | lncRNA | upstream | 294134 | 11662230 ~ 11663094 (+) | True | G25434 |
| TU30064 | lncRNA | upstream | 334159 | 11619169 ~ 11623069 (+) | True | G25422 |
| TU30578 | lncRNA | downstream | 299863 | 12274852 ~ 12275052 (+) | True | G25872 |
| TU30588 | lncRNA | downstream | 317934 | 12292923 ~ 12293129 (+) | True | G25882 |
| TU30592 | lncRNA | downstream | 320622 | 12295611 ~ 12296042 (+) | True | G25886 |
| XR_004580102.1 | lncRNA | downstream | 327935 | 12302924 ~ 12309500 (+) | True | LOC117599716 |
| TU30616 | lncRNA | downstream | 433332 | 12408321 ~ 12408523 (+) | True | G25907 |
| XM_026923995.2 | mRNA | upstream | 19665 | 11902218 ~ 11937563 (+) | True | shmt2 |
| XM_026947319.2 | mRNA | upstream | 64488 | 11832707 ~ 11892740 (+) | True | LOC113547077 |
| XM_026947391.2 | mRNA | upstream | 64488 | 11832707 ~ 11892740 (+) | False | LOC113547077 |
| XM_026927166.2 | mRNA | upstream | 196625 | 11754563 ~ 11760603 (+) | True | LOC113534407 |
| XM_034312214.1 | mRNA | upstream | 204010 | 11695632 ~ 11753218 (+) | False | LOC113526407 |
| XM_026927376.2 | mRNA | downstream | 45257 | 12020246 ~ 12026634 (+) | True | h6pd |
| XM_026917519.2 | mRNA | downstream | 57058 | 12032047 ~ 12035789 (+) | True | cenps |
| XM_026911066.2 | mRNA | downstream | 208058 | 12183047 ~ 12203172 (+) | False | cfap20dc |
| XM_026911010.2 | mRNA | downstream | 208112 | 12183101 ~ 12203172 (+) | True | cfap20dc |
| XM_026911202.2 | mRNA | downstream | 208112 | 12183101 ~ 12203172 (+) | False | cfap20dc |
| TU29627 | other | upstream | 1048656 | 10906200 ~ 10908572 (+) | True | G25029 |
| XR_003403740.2 | other | upstream | 1202606 | 10754515 ~ 10754622 (+) | True | LOC113537259 |
| TU29055 | other | upstream | 1758773 | 10197966 ~ 10198455 (+) | True | G24500 |
| TU28879 | other | upstream | 2050057 | 9895245 ~ 9907171 (+) | False | LOC113530691 |
| XR_004577034.1 | other | upstream | 2360374 | 9591941 ~ 9596854 (+) | False | LOC113532547 |
| TU30526 | other | downstream | 229540 | 12204529 ~ 12207257 (+) | False | si:dkeyp-67f1.2 |
| TU30617 | other | downstream | 551181 | 12526170 ~ 12527491 (+) | True | G25908 |
| TU31442 | other | downstream | 1291038 | 13266027 ~ 13331868 (+) | False | si:dkey-238f9.1 |
| XR_004577014.1 | other | downstream | 1520867 | 13495856 ~ 13499365 (+) | False | tshba |
| XR_004577009.1 | other | downstream | 1520868 | 13495857 ~ 13499365 (+) | False | tshba |
