RNA id: XR_003403456.2


Basic Information

Item Value
RNA id XR_003403456.2
length 938
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id LOC113533806
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16029134 ~ 16032135 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACAACCGCAATACCCGGATGAGACGGTTGTATCTGATTTGTCGACCCCCGGCGTTGCTTTAACGTATATGTAGTTCATAAACCAACCGAAACGAAAATGGATACCATAAAGGACTACAAGTCAAAGAAAAATCCAGCaagtctgaccagctaccagctcCAAAACACAGGTTGAGCTGCTCAGACTGGTAGATGGAAACAGTTTCTAAATTATTGCAACAAATGCAACATCATAGACAAGTTGTTCTCTTCATGACCCTCCATACCTCTCTTCATCAATCAATCAACTGAACCAGTCAACAAGCCTGATTTCAACGCCTTATGACCAGAGTACCCCAGTCAGCTCACATTACCTAACCATGGCCACCAGTCCACTGCCACCTGAAAATTCCTCTCTAAGGGTCCTCTAGTTTCTTCCTTAACCTGAAAAGCAAAACTACCCACACTACTCATATAACCAATCAATGCCTAGTATACTTCTCTAATGTCTACAATACAGCAAACCCTCAGCTGTGGTCAGCTAACTGATGTCTTCGCTCATCTACCTTCATGAGCAGCACTGATTAAGGTCCCCCAGGAGGAGGAACTTTAGCTGCCGTCGCAGCAGATTtataaacagagaaagaagaaggCACAGGTCTCTGTATCTAGAAAGAAATCCTTAACTTTAAGTCTTTCTCGAGATTACACAGtcatGCTCCAAATTCTCATTTTCTTTAGTCACTCCCAATCTGTGGGTTTTGTCCATGAGTAGGATGTGTCCCAGCTCAGGTTTTGGAGAACATTTGTGTCTGTCCTTCAGACTGACAGGAATGGGTGTgtgcaggtttgtgtgtgtgtgtgtgcatgtgtctgctcatgtgctttttttttttcttacttgctAAATAAAAGACTTGTGTGATGTCCTCTTTTCActtcctcttttcttctctgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33146 lncRNA upstream 15025 16013347 ~ 16014109 (+) True G28132
XR_004579697.1 lncRNA upstream 68264 15943362 ~ 15960870 (+) True LOC117599231
XR_003403691.1 lncRNA upstream 121080 15896428 ~ 15908054 (+) True LOC113536643
XR_004579681.1 lncRNA upstream 191748 15834478 ~ 15837386 (+) True LOC117599223
TU33049 lncRNA upstream 238690 15788651 ~ 15790444 (+) False LOC113534559
TU33168 lncRNA downstream 41087 16073222 ~ 16076550 (+) True G28150
TU33170 lncRNA downstream 51154 16083289 ~ 16084968 (+) False slc2a11a
TU33176 lncRNA downstream 73908 16106043 ~ 16106272 (+) True G28156
TU33180 lncRNA downstream 89842 16121977 ~ 16122332 (+) True G28160
TU33182 lncRNA downstream 90761 16122896 ~ 16123140 (+) True G28162
XM_026915455.2 mRNA upstream 18295 15993019 ~ 16010839 (+) True LOC113527532
XM_026915463.2 mRNA upstream 18295 15993020 ~ 16010839 (+) False LOC113527532
XM_026923932.2 mRNA upstream 137320 15887173 ~ 15891814 (+) True LOC113532530
XM_026927452.2 mRNA upstream 238695 15788626 ~ 15790439 (+) True LOC113534559
XM_026936877.2 mRNA upstream 279641 15734844 ~ 15749493 (+) True hemk1
XM_034300857.1 mRNA downstream 3318 16035453 ~ 16048798 (+) False rab44
XM_034300866.1 mRNA downstream 3318 16035453 ~ 16048798 (+) False rab44
XM_034300849.1 mRNA downstream 3319 16035454 ~ 16048798 (+) True rab44
XM_034300871.1 mRNA downstream 3319 16035454 ~ 16048798 (+) False rab44
XM_026934989.2 mRNA downstream 30989 16063124 ~ 16066779 (+) True trub2
XR_004580083.1 other upstream 734780 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 837478 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2527838 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 2529769 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 149183 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 2742635 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2785267 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3502306 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 4077995 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile