Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403551.2 |
| length | 1099 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 3 |
| gene id | LOC113534952 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 9738017 ~ 9739451 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU28665 | lncRNA | upstream | 68626 | 9658633 ~ 9669391 (+) | True | G24183 |
| TU28657 | lncRNA | upstream | 122554 | 9613112 ~ 9615463 (+) | True | G24178 |
| TU28656 | lncRNA | upstream | 125404 | 9612389 ~ 9612613 (+) | True | G24177 |
| TU28638 | lncRNA | upstream | 146371 | 9591428 ~ 9591646 (+) | True | G24162 |
| TU28636 | lncRNA | upstream | 148432 | 9589318 ~ 9589585 (+) | True | G24160 |
| TU28774 | lncRNA | downstream | 19134 | 9758585 ~ 9758966 (+) | True | G24283 |
| TU28780 | lncRNA | downstream | 29837 | 9769288 ~ 9769501 (+) | True | G24289 |
| TU28873 | lncRNA | downstream | 129156 | 9868607 ~ 9954984 (+) | True | G24354 |
| TU28891 | lncRNA | downstream | 198946 | 9938397 ~ 9941183 (+) | False | manbal |
| TU28932 | lncRNA | downstream | 254111 | 9993562 ~ 9995992 (+) | True | G24390 |
| XM_026913704.2 | mRNA | upstream | 26179 | 9694499 ~ 9711838 (+) | True | pkp1b |
| XM_026929606.2 | mRNA | upstream | 45051 | 9682331 ~ 9692966 (+) | True | smpd2b |
| XM_026929596.2 | mRNA | upstream | 45051 | 9682331 ~ 9692966 (+) | False | smpd2b |
| XM_026916986.2 | mRNA | upstream | 65372 | 9639106 ~ 9672645 (+) | True | tead3b |
| XM_026917003.2 | mRNA | upstream | 67481 | 9639105 ~ 9670536 (+) | False | tead3b |
| XM_026921885.2 | mRNA | downstream | 49212 | 9788663 ~ 9855541 (+) | True | nav1b |
| XM_026925788.2 | mRNA | downstream | 116520 | 9855971 ~ 9868275 (+) | True | mybphb |
| XM_026925796.2 | mRNA | downstream | 116520 | 9855971 ~ 9868275 (+) | False | mybphb |
| XM_026925802.2 | mRNA | downstream | 116521 | 9855972 ~ 9868275 (+) | False | mybphb |
| XM_034314745.1 | mRNA | downstream | 135257 | 9874708 ~ 9923165 (+) | False | LOC113530691 |
| XR_004577034.1 | other | upstream | 141163 | 9591941 ~ 9596854 (+) | False | LOC113532547 |
| TU28587 | other | upstream | 283555 | 9450925 ~ 9454462 (+) | False | hmga1b |
| TU28588 | other | upstream | 283555 | 9450925 ~ 9454462 (+) | True | hmga1b |
| XR_003402786.2 | other | upstream | 3984913 | 5717530 ~ 5753104 (+) | False | rbl1 |
| TU26124 | other | upstream | 4529153 | 5208346 ~ 5208864 (+) | True | G21901 |
| TU28879 | other | downstream | 155794 | 9895245 ~ 9907171 (+) | False | LOC113530691 |
| TU29055 | other | downstream | 458515 | 10197966 ~ 10198455 (+) | True | G24500 |
| XR_003403740.2 | other | downstream | 1015064 | 10754515 ~ 10754622 (+) | True | LOC113537259 |
| TU29627 | other | downstream | 1166749 | 10906200 ~ 10908572 (+) | True | G25029 |
| TU30526 | other | downstream | 2465078 | 12204529 ~ 12207257 (+) | False | si:dkeyp-67f1.2 |
