RNA id: XR_003403844.2


Basic Information

Item Value
RNA id XR_003403844.2
length 2464
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC113538428
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23177932 ~ 23187094 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTACACATCCACACCTCCATGCCTTCAAAACAGGACAGACCTGAGGAGGAACAGCAGCAACTTCTCTCTGCGGCGACGCACTGAAATCAGCCCTGGCTCTCTGTCTGAGCGAACAGCATGGCAGggaaagataagagagaaagagaaagcagcaCCATAGACATCTACATGGATAAGAAGAATAATAACTGGTCCAAGTGCACAAAAAGGATTGTCTTGCTGGGATTGTGacctaataatattaatttaccACTGGCTAAAAAGTGACATAATAAGTTGATTATGCCAAGCCCTTCATTGCTCATTCTCTCATGCTGTTCCGGATTGATGGAGGCCAACGTCACATTTCCTTCACCATGGCAGCGATGTCCTCGGCCACACGCCAGAACCCCTTTGATTAATCTGTCTCCTCTCTTCTAATCATTGTCCCAGCAGGAGAGAGCTGCCATGTGTTTTAAACACCATgccatcacacactgatttggGGCTGCTTTATGAGACTGACCTCCCGCAGACActcaaatataaacacacttttacaaTCTGACACACTCAATCAGGAATGCCCATGTTTAAGTGATGGCCAAGATTAACCATAttcttatacatttttttgATATGCATATTAACGTGTAAGGCAAATTCTGACTTGCTACAGTACCAGCACTTACTCCTGTATCTTGGCCTTGTGATGTAATGTGACTCTTTTCTCATCCATATCTTTGAATACCCTCTTATGTTCCACAAACCAAGAAGAATCAAGATGGCGCCGATGACTCCAGATGCTGTCATGGCTGATcctttaagacttttttttttctaaatcaaattttatttagtaCTTTTGCCACCACAGAAGCAGACCAAAACAAAGGTCGCATGCTCTGGAGGAGGCGCAGAAAACATAGATAGAAGCACCCAGGTGTGCGAAACTAAAAGCACTCTGTCCACTTCTGCCCAGTATACTGCTCGCCAATGTATAGTCCATAGAAAACAAGCTTGACAACATAAGAACAAGAGTTTGTTTCTGATGTGACATGAGAAACTGCAATATCCTTTGTGTCACCAAAACATGGCTTACCCCCAGTACGAGATCAGTCCATTCAACCTGCGCAGTCCTATTCTATTTTCCAAATGGACAGAGCAGAGCATAGGAGTCCAGAAAATCCAAAGGAGGAGGAGTCTGTTTTATGACCAACAACAACTGGTGTGATGCTAGGAACATTGCTGTTCTCTCCCATTCCTGTTCACCAAACCTGGACCACCCGAAAATCAGATGCCACCCCTTCTACCTGCCTCGAGAGTTCACCTCGGTCATCATCCCAGCCGTTTACATCCCATCTCATGCAGACATGCACATTGCCTTATCTCCAAGTCATGATACATTCAACAGCCTTTAGAACAAATATCCAGACAATGACCTCATCATAACCAGGGGCTTAAAACCAAGGCCAACTTAAAAACAGGTCATGCCAAACTTCAACCAACATATCATGTGCTCTACCAGGGGTGTAAAGACAATGGACCACTGCTACACACAATTCAAGAAGGCTTACAAGGCCACTTCAATGCCTGTTTTTAATCCTGTTTAAATCCAACCATGCTGCCATCTTTCTCATACTGGAATATAAACAAAGTATGTTGCAGGAAGCCTTTGAAACACAATGATATAGTGTCTGAAGCTTTCCATAGAGTTCATTATCCATTATCAGCTTTTGCCTGCtcttgttttgtgtgaaaagacGAGAGGAGGGTGAAACTGATACAAACTGATACACACATTCGTACAAGCACATCTAAATCCATGGTGAAAGAAACTATGCACTGCTATAGTGTTGGCAAGAGCACTGGAAATACTGCAGCAAGGTTTTTGGACATGGTGGGATGGAACCAAAGAAAGGAAGATCATACGCAGACTCATGGTCAAAAGCAGGATCAAATCAGCATCAAAGCAGACACATGGTCAATGGAAACAAGCAGCATGAAGTTCCTTCTGCCTAACCCTAGTGTCTATGATGTCCTCCCAGGACCCAAAATTGTTGTCAATGTTGGGGCTGAAGAAAGACCCAAGCTTGACACTCTGCTGGAAGCAAGCTACCCTACAACACATTCTGTCTTCAAACAGGGCAGCACTTGCAGAAGAAAGATATCATTAGAGGCATAGCAGGGTGTTAACTTCATTGAAGGGACTTCTGGAAGAAGTCCTTTTCATCAGTGAAGAGACGCTACAAACACCAGTGAGAATGGTTTGCTTGAAATAGCCACCTACTGTGATGTGTGGATGGACAATCAGCAGTGGTTCATCTTCCAACAGGACTGAATATAGACACATTACTGAGGCCAGACCTGTTAATCTGGTTCAGGGCAACAAAAGTCATTATCAAGCTGGAGCAGATAGTTCCAGAAAAAGATTATTACTGTTTCAATGTGATATGACCATAATCATACATTACTGAGgtaaat

Function

GO:

id name namespace
GO:0004032 alditol molecular_function
GO:0004033 aldo-keto reductase (NADP) activity molecular_function
GO:0008106 alcohol dehydrogenase (NADP+) activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579611.1 lncRNA upstream 151433 22988121 ~ 23026499 (+) True LOC117599173
TU37722 lncRNA upstream 366926 22809395 ~ 22811006 (+) True G31979
TU37666 lncRNA upstream 592742 22582349 ~ 22585190 (+) True G31944
TU37582 lncRNA upstream 663919 22504504 ~ 22514013 (+) True G31878
TU37560 lncRNA upstream 692485 22481404 ~ 22485447 (+) True G31856
TU38127 lncRNA downstream 268866 23455960 ~ 23458710 (+) False G32310
TU38129 lncRNA downstream 268976 23456070 ~ 23459381 (+) True G32310
TU38294 lncRNA downstream 329310 23516404 ~ 23560789 (+) True G32466
TU38297 lncRNA downstream 344208 23531302 ~ 23560789 (+) False G32466
TU38290 lncRNA downstream 363255 23550349 ~ 23560789 (+) False G32466
XM_026933483.2 mRNA upstream 14277 23141011 ~ 23163655 (+) True ap1m3
XM_026933482.2 mRNA upstream 14277 23141070 ~ 23163655 (+) False ap1m3
XM_026933484.2 mRNA upstream 14277 23141091 ~ 23163655 (+) False ap1m3
XM_026933543.2 mRNA upstream 38736 23134161 ~ 23139196 (+) False c2h1orf210
XM_034300472.1 mRNA upstream 38736 23134162 ~ 23139196 (+) False c2h1orf210
XM_026933514.2 mRNA downstream 90849 23277943 ~ 23453663 (+) False lrp8
XM_026933515.2 mRNA downstream 90849 23277943 ~ 23453663 (+) False lrp8
XM_026933516.2 mRNA downstream 90849 23277943 ~ 23451969 (+) False lrp8
XM_026933511.2 mRNA downstream 90849 23277943 ~ 23451968 (+) True lrp8
XM_026933512.2 mRNA downstream 90849 23277943 ~ 23451968 (+) False lrp8
XR_004579462.1 other upstream 575594 22598341 ~ 22602338 (+) False tmem69
TU36319 other upstream 2160485 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 3067707 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 3640918 19534441 ~ 19537014 (+) False smx5
trnai-aau other upstream 4360457 18817402 ~ 18817475 (+) True trnai-aau
trnaf-gaa_16 other downstream 288857 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 833284 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 1465896 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 1466091 24653185 ~ 24653965 (+) False LOC117598985
XR_003403845.2 other downstream 3426556 26613650 ~ 26629851 (+) False st6gal2b

Expression Profile