Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007926 |
| length | 1476 |
| lncRNA type | antisense_over |
| GC content | 0.37 |
| exon number | 2 |
| gene id | XLOC_004150 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 25475305 ~ 25476980 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0050877 | nervous system process | biological_process |
| GO:0009581 | detection of external stimulus | biological_process |
| GO:0009582 | detection of abiotic stimulus | biological_process |
| GO:0009583 | detection of light stimulus | biological_process |
| GO:0009314 | response to radiation | biological_process |
| GO:0050953 | sensory perception of light stimulus | biological_process |
| GO:0104004 | cellular response to environmental stimulus | biological_process |
| GO:0007600 | sensory perception | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0007602 | phototransduction | biological_process |
| GO:0009416 | response to light stimulus | biological_process |
| GO:0015696 | ammonium transport | biological_process |
| GO:0003008 | system process | biological_process |
| GO:0051606 | detection of stimulus | biological_process |
| GO:0071214 | cellular response to abiotic stimulus | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0071478 | cellular response to radiation | biological_process |
| GO:0071482 | cellular response to light stimulus | biological_process |
| GO:0097272 | ammonium homeostasis | biological_process |
| GO:0031226 | intrinsic component of plasma membrane | cellular_component |
| GO:0042995 | cell projection | cellular_component |
| GO:0030141 | secretory granule | cellular_component |
| GO:0001750 | photoreceptor outer segment | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0044441 | obsolete ciliary part | cellular_component |
| GO:0044459 | obsolete plasma membrane part | cellular_component |
| GO:0120025 | plasma membrane bounded cell projection | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0097730 | non-motile cilium | cellular_component |
| GO:0005929 | cilium | cellular_component |
| GO:0097731 | 9+0 non-motile cilium | cellular_component |
| GO:0097733 | photoreceptor cell cilium | cellular_component |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0008020 | G protein-coupled photoreceptor activity | molecular_function |
| GO:0008066 | glutamate receptor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00007924 | lncRNA | downstream | 62152 | 25412343 ~ 25413153 (-) | True | XLOC_004148 |
| TCONS_00007921 | lncRNA | downstream | 66409 | 25368112 ~ 25408896 (-) | False | XLOC_004147 |
| TCONS_00008796 | lncRNA | downstream | 71622 | 25368112 ~ 25403683 (-) | False | XLOC_004147 |
| TCONS_00007917 | lncRNA | downstream | 262041 | 25209734 ~ 25213264 (-) | True | XLOC_004143 |
| TCONS_00007912 | lncRNA | downstream | 655304 | 24819265 ~ 24820001 (-) | True | XLOC_004141 |
| TCONS_00008799 | lncRNA | upstream | 1142454 | 26619434 ~ 26666495 (-) | False | XLOC_004162 |
| TCONS_00007965 | lncRNA | upstream | 2025225 | 27502205 ~ 27507973 (-) | False | XLOC_004167 |
| TCONS_00007962 | lncRNA | upstream | 2025529 | 27502509 ~ 27503132 (-) | False | XLOC_004167 |
| TCONS_00008800 | lncRNA | upstream | 2066598 | 27543578 ~ 27625465 (-) | False | XLOC_004169 |
| TCONS_00007969 | lncRNA | upstream | 2115663 | 27592643 ~ 27625125 (-) | False | XLOC_004169 |
| TCONS_00007925 | mRNA | downstream | 13969 | 25436440 ~ 25461336 (-) | True | XLOC_004149 |
| TCONS_00007923 | mRNA | downstream | 56449 | 25411914 ~ 25418856 (-) | False | XLOC_004148 |
| TCONS_00007922 | mRNA | downstream | 91092 | 25382602 ~ 25384213 (-) | True | XLOC_004147 |
| TCONS_00007920 | mRNA | downstream | 150771 | 25313810 ~ 25324534 (-) | True | XLOC_004146 |
| TCONS_00007919 | mRNA | downstream | 217710 | 25252466 ~ 25257595 (-) | True | XLOC_004145 |
| TCONS_00007929 | mRNA | upstream | 52068 | 25529048 ~ 25538341 (-) | False | XLOC_004151 |
| TCONS_00007930 | mRNA | upstream | 52100 | 25529080 ~ 25539323 (-) | True | XLOC_004151 |
| TCONS_00007932 | mRNA | upstream | 235792 | 25712772 ~ 25733910 (-) | False | XLOC_004153 |
| TCONS_00007933 | mRNA | upstream | 237115 | 25714095 ~ 25734417 (-) | False | XLOC_004153 |
| TCONS_00007934 | mRNA | upstream | 245025 | 25722005 ~ 25730416 (-) | True | XLOC_004153 |
| TCONS_00007916 | other | downstream | 270062 | 25205153 ~ 25205243 (-) | True | XLOC_004144 |
| TCONS_00007913 | other | downstream | 507418 | 24967771 ~ 24967887 (-) | True | XLOC_004142 |
| TCONS_00007910 | other | downstream | 942347 | 24525676 ~ 24532958 (-) | True | XLOC_004138 |
| TCONS_00007888 | other | downstream | 1819827 | 23655350 ~ 23655478 (-) | True | XLOC_004130 |
| TCONS_00007873 | other | downstream | 2315998 | 23159189 ~ 23159307 (-) | True | XLOC_004123 |
| TCONS_00007928 | other | upstream | 51577 | 25528557 ~ 25532480 (-) | False | XLOC_004151 |
| TCONS_00007931 | other | upstream | 192859 | 25669839 ~ 25669955 (-) | True | XLOC_004152 |
| TCONS_00007940 | other | upstream | 380961 | 25857941 ~ 25931082 (-) | False | XLOC_004157 |
| TCONS_00007943 | other | upstream | 543119 | 26020099 ~ 26180714 (-) | True | XLOC_004157 |
| TCONS_00007948 | other | upstream | 756747 | 26233727 ~ 26237953 (-) | True | XLOC_004159 |
