Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003404676.1 |
| length | 1173 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 4 |
| gene id | LOC113545969 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 4911803 ~ 4913793 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU25983 | lncRNA | upstream | 9803 | 4879209 ~ 4902000 (+) | True | G21791 |
| TU25957 | lncRNA | upstream | 77745 | 4830903 ~ 4834058 (+) | True | G21771 |
| TU25948 | lncRNA | upstream | 103376 | 4808123 ~ 4808427 (+) | True | G21763 |
| TU25799 | lncRNA | upstream | 248424 | 4658214 ~ 4663379 (+) | True | G21629 |
| TU25744 | lncRNA | upstream | 385471 | 4525923 ~ 4526332 (+) | True | G21577 |
| XR_004577063.1 | lncRNA | downstream | 3352 | 4917145 ~ 4918634 (+) | True | LOC117595874 |
| TU26126 | lncRNA | downstream | 296072 | 5209865 ~ 5210117 (+) | True | G21903 |
| TU26152 | lncRNA | downstream | 343809 | 5257602 ~ 5257827 (+) | True | G21928 |
| TU26199 | lncRNA | downstream | 416102 | 5329895 ~ 5330285 (+) | True | G21973 |
| TU26208 | lncRNA | downstream | 420855 | 5334648 ~ 5334864 (+) | True | G21982 |
| XM_026945633.2 | mRNA | upstream | 152158 | 4754266 ~ 4759645 (+) | False | spega |
| XM_034310135.1 | mRNA | upstream | 194530 | 4708587 ~ 4717273 (+) | False | LOC113545806 |
| XM_026945421.2 | mRNA | upstream | 194530 | 4708842 ~ 4717273 (+) | True | LOC113545806 |
| XM_034310134.1 | mRNA | upstream | 194530 | 4709039 ~ 4717273 (+) | False | LOC113545806 |
| XM_026945566.2 | mRNA | upstream | 219775 | 4652999 ~ 4692028 (+) | False | stk11ip |
| XM_026920348.2 | mRNA | downstream | 208927 | 5122720 ~ 5127596 (+) | False | wbp4 |
| XM_026920338.2 | mRNA | downstream | 208928 | 5122721 ~ 5127596 (+) | True | wbp4 |
| XM_026920371.2 | mRNA | downstream | 226608 | 5140401 ~ 5154427 (+) | True | LOC113530419 |
| XM_034313879.1 | mRNA | downstream | 326052 | 5239845 ~ 5255979 (+) | True | nhej1 |
| XM_026918678.2 | mRNA | downstream | 326058 | 5239851 ~ 5255979 (+) | False | nhej1 |
| XR_004579614.1 | other | upstream | 152158 | 4754266 ~ 4759645 (+) | True | spega |
| XR_003404681.1 | other | upstream | 251680 | 4660009 ~ 4660123 (+) | True | LOC113545978 |
| trnah-gug_1 | other | upstream | 560055 | 4351677 ~ 4351748 (+) | True | trnah-gug_1 |
| XR_004580256.1 | other | upstream | 1170113 | 3738008 ~ 3741690 (+) | False | LOC113545962 |
| TU26030 | other | downstream | 174341 | 5088134 ~ 5088578 (+) | True | G21835 |
| TU26124 | other | downstream | 294553 | 5208346 ~ 5208864 (+) | True | G21901 |
| XR_003402786.2 | other | downstream | 803737 | 5717530 ~ 5753104 (+) | False | rbl1 |
| TU28587 | other | downstream | 4537132 | 9450925 ~ 9454462 (+) | False | hmga1b |
| TU28588 | other | downstream | 4537132 | 9450925 ~ 9454462 (+) | True | hmga1b |
