RNA id: XR_004577063.1


Basic Information

Item Value
RNA id XR_004577063.1
length 1237
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id LOC117595874
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4917145 ~ 4918634 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTTAACTCTGTGAATCCAATCCTATTACCTTGGCGCTGGGGAGTGATGGTCCATTATCCTCTTCCTATAAGCAAAGGAATGCGCTTATTTGCCATAAATGACTCAGTCATGTTAAGTCCACCTTTGATTTATCTGATTTATCCTGGTTATATAATAAGTATTCACTTCAAATTGTACCCGAATTGGTTCACACTTCTGTCAGTAACTCATTTATTGTGAGATGCTAAAAGATTTATTCAAATCTGCAGCAAACATTAAAATTACCGAATGCACTTCCAACAAAAGATATTTGGTTATAGAGTCCAGTGTGGAAGATTCACCTTGATAAGTCACTTTGATGCTTTGTTTACAATATGTAGTGTTGGTTTCCTGGACAGTGGCTAAGCTTAGATCTGGGCTAAATTTTCTTTTCCTTGGAGAATCTAAATTTAGAATGCTGTAAAGTACAGGGCCCAGTTGCATAATCATAGCCATTATCTTAACACTTTAAACAAAATGGccgacagagggagagagagcagagtTGCTGGCAGGACGTTACCCAGAGCAACAGAAGATACATTGCCTCACACAGCTGTTAAATCAGCTCCGCTTGGACAATCTCTCACTCAAGATGAAGATGCACCAGTGACAAGCCAGGACCAAACAGCGCAAAATGAAGaagatgGACAGCACCCAAGTGACCCCTGTGGGAAGCGGCtcagacactgagacacagaaagacactCCAAGCAAGATAACCATGAACCATATACTGGAAAAACAATATGAAGTATTGACACTGGAAAAGGCAAAACTAAAATTAGAAATACAAAAACTAGAATTAGAGAAAACTAAGCTGAGGTTACAGAACCTTGGACATGAACTGTAGATCTCATTAACCATTGTCCaagaattaattaatcaattaattgtatttaataatttctCAGATTTTCCTGTTGTCGTTACTTATGtagttaaattaaatcaatGTTTACTATAAGTCTACATAGAATCTAAATTAATTTAGCTGTATTTAACTGACTTGAAGAATTATATAgtatttcagttgtttttaatgATCCTCTGCgtcacatttttgtaaatattggtTTGATGAATACAGTATATGTCAAGTACATTTCAAAATAGACAGTCTTTCAGTTTTCTCAGtcaaacagagaaaatattttctacaaTCATTTGTCGAATATAACACCCAGATCCATCTTCATCTCCTGCCTCAGTGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404676.1 lncRNA upstream 3352 4911803 ~ 4913793 (+) True LOC113545969
TU25983 lncRNA upstream 15145 4879209 ~ 4902000 (+) True G21791
TU25957 lncRNA upstream 83087 4830903 ~ 4834058 (+) True G21771
TU25948 lncRNA upstream 108718 4808123 ~ 4808427 (+) True G21763
TU25799 lncRNA upstream 253766 4658214 ~ 4663379 (+) True G21629
TU26126 lncRNA downstream 291231 5209865 ~ 5210117 (+) True G21903
TU26152 lncRNA downstream 338968 5257602 ~ 5257827 (+) True G21928
TU26199 lncRNA downstream 411261 5329895 ~ 5330285 (+) True G21973
TU26208 lncRNA downstream 416014 5334648 ~ 5334864 (+) True G21982
TU26266 lncRNA downstream 517132 5435766 ~ 5437469 (+) True G22032
XM_026945633.2 mRNA upstream 157500 4754266 ~ 4759645 (+) False spega
XM_034310135.1 mRNA upstream 199872 4708587 ~ 4717273 (+) False LOC113545806
XM_026945421.2 mRNA upstream 199872 4708842 ~ 4717273 (+) True LOC113545806
XM_034310134.1 mRNA upstream 199872 4709039 ~ 4717273 (+) False LOC113545806
XM_026945566.2 mRNA upstream 225117 4652999 ~ 4692028 (+) False stk11ip
XM_026920348.2 mRNA downstream 204086 5122720 ~ 5127596 (+) False wbp4
XM_026920338.2 mRNA downstream 204087 5122721 ~ 5127596 (+) True wbp4
XM_026920371.2 mRNA downstream 221767 5140401 ~ 5154427 (+) True LOC113530419
XM_034313879.1 mRNA downstream 321211 5239845 ~ 5255979 (+) True nhej1
XM_026918678.2 mRNA downstream 321217 5239851 ~ 5255979 (+) False nhej1
XR_004579614.1 other upstream 157500 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 257022 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 565397 4351677 ~ 4351748 (+) True trnah-gug_1
XR_004580256.1 other upstream 1175455 3738008 ~ 3741690 (+) False LOC113545962
TU26030 other downstream 169500 5088134 ~ 5088578 (+) True G21835
TU26124 other downstream 289712 5208346 ~ 5208864 (+) True G21901
XR_003402786.2 other downstream 798896 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 4532291 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 4532291 9450925 ~ 9454462 (+) True hmga1b

Expression Profile