Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577268.1 |
| length | 850 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 3 |
| gene id | LOC117596090 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 24649018 ~ 24650283 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU38672 | lncRNA | upstream | 314563 | 24334199 ~ 24334455 (+) | True | G32795 |
| TU38656 | lncRNA | upstream | 388641 | 24259993 ~ 24260377 (+) | True | G32782 |
| TU38526 | lncRNA | upstream | 704558 | 23944239 ~ 23944460 (+) | True | G32662 |
| TU38351 | lncRNA | upstream | 982085 | 23662954 ~ 23666933 (+) | True | LOC113538279 |
| TU38761 | lncRNA | downstream | 4106 | 24654389 ~ 24656248 (+) | False | LOC117598985 |
| TU38763 | lncRNA | downstream | 5367 | 24655650 ~ 24656248 (+) | False | LOC117598985 |
| XR_004577233.1 | lncRNA | downstream | 113144 | 24763427 ~ 24764691 (+) | True | LOC117596060 |
| TU39043 | lncRNA | downstream | 597563 | 25247846 ~ 25250585 (+) | True | G33148 |
| TU39088 | lncRNA | downstream | 922499 | 25572782 ~ 25573315 (+) | True | G33192 |
| XM_026933575.2 | mRNA | upstream | 60487 | 24575681 ~ 24588531 (+) | True | rtn4a |
| XM_034311017.1 | mRNA | upstream | 78399 | 24568575 ~ 24570619 (+) | True | LOC113538193 |
| XM_026933496.2 | mRNA | upstream | 81343 | 24558933 ~ 24567675 (+) | True | LOC113538433 |
| XM_026933019.2 | mRNA | upstream | 809428 | 23836334 ~ 23839590 (+) | True | rgs4 |
| XM_026933151.2 | mRNA | upstream | 995463 | 23633606 ~ 23653555 (+) | True | uhmk1 |
| XM_034310175.1 | mRNA | downstream | 2710 | 24652993 ~ 24656218 (+) | True | LOC117598985 |
| XM_026933073.2 | mRNA | downstream | 1106531 | 25756814 ~ 25784890 (+) | True | trak2 |
| XM_026933074.2 | mRNA | downstream | 1106531 | 25756814 ~ 25784890 (+) | False | trak2 |
| XM_026933075.2 | mRNA | downstream | 1106531 | 25756814 ~ 25784890 (+) | False | trak2 |
| XM_026933076.2 | mRNA | downstream | 1115125 | 25765408 ~ 25784890 (+) | False | trak2 |
| TU38551 | other | upstream | 627982 | 24020378 ~ 24021036 (+) | True | G32684 |
| trnaf-gaa_16 | other | upstream | 1172995 | 23475951 ~ 23476023 (+) | True | trnaf-gaa_16 |
| XR_004579462.1 | other | upstream | 2046680 | 22598341 ~ 22602338 (+) | False | tmem69 |
| TU36319 | other | upstream | 3631571 | 21014858 ~ 21017447 (+) | False | insl5a |
| XR_003403752.1 | other | upstream | 4538793 | 20110130 ~ 20110225 (+) | True | LOC113537321 |
| TU38758 | other | downstream | 2707 | 24652990 ~ 24653965 (+) | False | LOC117598985 |
| TU38760 | other | downstream | 2902 | 24653185 ~ 24653965 (+) | False | LOC117598985 |
| XR_003403845.2 | other | downstream | 1963367 | 26613650 ~ 26629851 (+) | False | st6gal2b |
| TU39837 | other | downstream | 1980311 | 26630594 ~ 26648369 (+) | False | st6gal2b |
| XR_003403829.2 | other | downstream | 3119513 | 27769796 ~ 27787602 (+) | False | adam23a |
