RNA id: XR_004577457.1


Basic Information

Item Value
RNA id XR_004577457.1
length 113
RNA type ncRNA
GC content 0.40
exon number 1
gene id LOC117596284
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4447367 ~ 4447479 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAGCCGCTCTCTTCATTCACACATAAATCTTTCcccttttactaaagatttctgtgGAGAGGAACATTGATGAGTTCTACTTatgtttgtgggctttgctgttGCAAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25721 lncRNA downstream 1152 4445803 ~ 4446215 (-) True G21554
TU25719 lncRNA downstream 3917 4442856 ~ 4443450 (-) True G21552
TU25710 lncRNA downstream 18026 4427193 ~ 4429341 (-) True G21546
TU25634 lncRNA downstream 93052 4354099 ~ 4354315 (-) True G21486
TU25564 lncRNA downstream 175338 4271809 ~ 4272029 (-) True G21441
TU25722 lncRNA upstream 2983 4450462 ~ 4450778 (-) True G21555
TU25724 lncRNA upstream 13452 4460931 ~ 4462016 (-) True G21557
TU25760 lncRNA upstream 92748 4540227 ~ 4546709 (-) False G21592
TU25761 lncRNA upstream 92748 4540227 ~ 4546709 (-) True G21592
XR_003404663.2 lncRNA upstream 103092 4550571 ~ 4569672 (-) True LOC113545826
XM_026945430.2 mRNA downstream 82196 4359120 ~ 4365171 (-) True prelid3b
XM_034310026.1 mRNA downstream 82239 4359120 ~ 4365128 (-) False prelid3b
XM_026945639.2 mRNA downstream 408083 4034071 ~ 4039284 (-) True cldn10a
XM_026945452.2 mRNA downstream 421389 4023790 ~ 4025978 (-) True si:busm1-52i16.2
XM_026945608.2 mRNA downstream 438790 4004622 ~ 4008577 (-) False si:ch211-181l5.2
XM_026945646.2 mRNA upstream 28373 4475852 ~ 4483914 (-) True LOC113545959
XM_026945449.2 mRNA upstream 142905 4590384 ~ 4618467 (-) True igfbp2a
XM_026945422.2 mRNA upstream 269931 4717410 ~ 4719627 (-) True inha
XM_026945530.2 mRNA upstream 366251 4813730 ~ 4902011 (-) False obsl1a
XM_026945531.2 mRNA upstream 366251 4813730 ~ 4901992 (-) True obsl1a
trnaf-gaa_14 other downstream 115196 4332099 ~ 4332171 (-) True trnaf-gaa_14
TU25557 other downstream 190280 4256668 ~ 4257087 (-) True G21434
XR_004579840.1 other downstream 669379 3750018 ~ 3777988 (-) True rab22a
XR_004580246.1 other downstream 710481 3717715 ~ 3736886 (-) False npepl1
trnaf-gaa_13 other downstream 1410011 3037284 ~ 3037356 (-) True trnaf-gaa_13
XR_004577458.1 other upstream 10857 4458336 ~ 4458447 (-) True LOC117596286
XR_003404665.2 other upstream 365796 4813275 ~ 4902011 (-) False obsl1a
XR_003404666.2 other upstream 373858 4821337 ~ 4902011 (-) False obsl1a
XR_004579842.1 other upstream 373879 4821358 ~ 4902011 (-) False obsl1a
XR_003404667.2 other upstream 373900 4821379 ~ 4902011 (-) False obsl1a