RNA id: XR_004579381.1


Basic Information

Item Value
RNA id XR_004579381.1
length 1314
lncRNA type intronic
GC content 0.42
exon number 3
gene id LOC117598838
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11325410 ~ 11327031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATCCAcccccctcccctccctctctctctgtctcacgcTCTCACTCTTGTATTATTTAGTTGTGGGCATAAAAATAGAAGCAAACTCCCCTCCCTATTTCTAAAAAGTAAAGATGcctttatattaaaaatttaagCGCAAGATTATCATGCATGTAGTTTACATGTCATGAGGTGCACATTATGTCATGAGGTGCACATTATCACGCAGGTATTTTATATGTCTTGAGATGTACTGTACATTATCACGCAGGTAGTTTACATGTCATGAGGTGCACATTATCACGCAGGTAGTCTACATGTCATGAGGTGCACGTTATCACGCAGGTAGTTTACATGTCATGAGGTGTACGTTATCACGCAGGTAGTCTACATGTCATGAGGTGTACGTTATCACGCAGGTAGTCTACATGTCATGAGGTGCACGTTATCACGCAGGTAGTCTACATGTCATGAGGTGCACGTTATCACGCAGGTAGTCTACATGTCATGAAGTGTACGTTATCACGCAGGTAGTCTACATGTCATGAGGTGCACGTTATCACGCAGGTAGTTTACATGTCATGAGGTGCACGTTATCACGCAGGTAGTTTACATGTCATGAGGTGCACGTTATCATGCAGGTAGTTTACACGTCATGAGATGTACGTTATTATGCAGGTAGTTTACACGTCATGAGGTGCACGTTATTATGCAGGTAGTTTACATGTCATGAGGTGCACGTTATCACGCAGGTAGTTTACATGTCATGAGGTGTACGTTATCACGCAGGTAGTTTACATGTCATGAGGTGTACGTTATCACGCAGGTAGTCTACATGTCATGAGGTGTACGTTATCACGCAGGTAGTCTACATGTCATGAGGTGTATGTTATCACGCAGGTAGTTTACATGTCATGAGGTGTACGTTATCACGCAGGTAGTCTACATGTCATGAGGTGCACATTATCATGCAGGTAGTTTACATGTCATGAGGTGCACGTTATCACGCAGGTAGTTTACATGTCATGAGGTGCACGTTATCACGCAGGTAGTCTACATGTCATGAGATGTACGTTATTATGCAGGTAGTTTACACGTCATGAGGTGCACGTTGAGGTGCAGGTAGTTTACACGTCATGAGGTGCACGTTATTATGCAGGTAGTTTACATGTCATGAGGTGCACGTTATTATGCAGGTAGTTTACATGTCATGAGGTGCACGTTATTATGCAGGTAGTTTACATGTCATAAAGTACATAAAGTGTTGCAATAATAAAACTGTATCTTGTgttattactgtaattatttatatgcTTTTTATCCTGTTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29719 lncRNA upstream 90807 11234122 ~ 11234603 (+) True G25110
TU29633 lncRNA upstream 406906 10916056 ~ 10918504 (+) True G25035
TU29576 lncRNA upstream 478285 10821467 ~ 10847125 (+) True G24989
TU29341 lncRNA upstream 835122 10489288 ~ 10490288 (+) True G24759
TU29333 lncRNA upstream 872648 10452249 ~ 10452762 (+) True G24751
TU29983 lncRNA downstream 100368 11427399 ~ 11427789 (+) True G25344
TU29995 lncRNA downstream 115456 11442487 ~ 11444101 (+) True G25355
TU29996 lncRNA downstream 117136 11444167 ~ 11444584 (+) True G25356
TU29997 lncRNA downstream 118093 11445124 ~ 11445436 (+) True G25357
TU30013 lncRNA downstream 130747 11457778 ~ 11458004 (+) True G25371
XM_034299935.1 mRNA upstream 12485 11263131 ~ 11312925 (+) True LOC113533429
XM_034299937.1 mRNA upstream 12485 11263131 ~ 11312925 (+) False LOC113533429
XM_034299941.1 mRNA upstream 12485 11263131 ~ 11312925 (+) False LOC113533429
XM_026925588.2 mRNA upstream 12485 11263133 ~ 11312925 (+) False LOC113533429
XM_026925596.2 mRNA upstream 12485 11263133 ~ 11312925 (+) False LOC113533429
XM_026922874.2 mRNA downstream 3332 11330363 ~ 11335498 (+) True stmn3
XM_026923552.2 mRNA downstream 26541 11353572 ~ 11357653 (+) True sp7
XM_026926305.2 mRNA downstream 81745 11408776 ~ 11419440 (+) True igsf8
XM_026926314.2 mRNA downstream 81745 11408776 ~ 11419440 (+) False igsf8
XM_034299433.1 mRNA downstream 81745 11408776 ~ 11419440 (+) False igsf8
TU29627 other upstream 416838 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 570788 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 1126955 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 1418239 9895245 ~ 9907171 (+) False LOC113530691
XR_004577034.1 other upstream 1728556 9591941 ~ 9596854 (+) False LOC113532547
TU30526 other downstream 877498 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU30617 other downstream 1199139 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 1938996 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 2168825 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 2168826 13495857 ~ 13499365 (+) False tshba

Expression Profile