Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579401.1 |
| length | 462 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 3 |
| gene id | LOC117598849 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 14813879 ~ 14850121 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU32379 | lncRNA | upstream | 21257 | 14792411 ~ 14792622 (+) | True | G27450 |
| TU32212 | lncRNA | upstream | 209333 | 14562217 ~ 14604546 (+) | True | G27311 |
| TU32208 | lncRNA | upstream | 258414 | 14555251 ~ 14555465 (+) | True | G27309 |
| TU32173 | lncRNA | upstream | 317021 | 14496212 ~ 14496858 (+) | True | G27275 |
| TU32167 | lncRNA | upstream | 322743 | 14490780 ~ 14491136 (+) | True | G27269 |
| XR_004577376.1 | lncRNA | downstream | 26557 | 14876678 ~ 14880424 (+) | True | LOC117596203 |
| TU32642 | lncRNA | downstream | 256836 | 15106957 ~ 15107174 (+) | True | G27679 |
| TU32702 | lncRNA | downstream | 426519 | 15276640 ~ 15278716 (+) | True | G27733 |
| TU32738 | lncRNA | downstream | 621411 | 15471532 ~ 15471756 (+) | True | G27764 |
| TU32743 | lncRNA | downstream | 639415 | 15489536 ~ 15489764 (+) | True | G27769 |
| XM_026920903.2 | mRNA | upstream | 24812 | 14775843 ~ 14789067 (+) | True | tgm2b |
| XM_026920911.2 | mRNA | upstream | 24812 | 14781158 ~ 14789067 (+) | False | tgm2b |
| XM_034314476.1 | mRNA | upstream | 51952 | 14727157 ~ 14761927 (+) | False | quo |
| XM_034313764.1 | mRNA | downstream | 189736 | 15039857 ~ 15050797 (+) | True | thumpd3 |
| XM_026929226.2 | mRNA | downstream | 191474 | 15041595 ~ 15050797 (+) | False | thumpd3 |
| XM_026929232.2 | mRNA | downstream | 191498 | 15041619 ~ 15050797 (+) | False | thumpd3 |
| XM_034313760.1 | mRNA | downstream | 191564 | 15041685 ~ 15050797 (+) | False | thumpd3 |
| XM_034313748.1 | mRNA | downstream | 191671 | 15041792 ~ 15050797 (+) | False | thumpd3 |
| XR_004577012.1 | other | upstream | 1312583 | 13498298 ~ 13501296 (+) | False | tshba |
| XR_004577009.1 | other | upstream | 1314514 | 13495857 ~ 13499365 (+) | False | tshba |
| trnaf-gaa_15 | other | downstream | 341463 | 15191584 ~ 15191656 (+) | True | trnaf-gaa_15 |
| XR_004580083.1 | other | downstream | 428706 | 15278827 ~ 15294354 (+) | False | fancd2 |
| TU33403 | other | downstream | 1331197 | 16181318 ~ 16182303 (+) | False | mustn1a |
| TU34871 | other | downstream | 3924649 | 18774770 ~ 18826920 (+) | False | G29569 |
| trnai-aau | other | downstream | 3967281 | 18817402 ~ 18817475 (+) | True | trnai-aau |
