RNA id: XR_004579416.1


Basic Information

Item Value
RNA id XR_004579416.1
length 1960
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC113545971
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4044564 ~ 4062409 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTCTTTCCTTCGGGGGAATGGTCAAAAACTCCATGAAGAGGATATATGACGACAGGTGTTCTCCTCCTtggaaatattttgttgttgttcggAGACACCCTCTTGGCTTGAGAAATACTTAGCTTGCCACAAAAACCCCTTGCACAGTGCTATTTCCTCTGAATATTTGTCAGGACAGGAGATGAGCAAACTGTGGGGTGCAGCTGGGGCTCTGGAAGAAATGAAGGCAGTGGAGTTTTGCAGGTGTTCCCTGAAAATAACCCTTAAAGATCTCTCCAAAACAAGCCTTAACCAAGAAGATCTTCTTCACGATATTTAATCTGAGACATAAGGTATGCTTGGCAAATAcactaattataattataatgacaCTTGTTTAAGAATGATATGTCTTTCcttatgtttttaaatcatttgacTCACCTGGACACCTGGAACACTGCATTATTTGGTGCTTCCTGGCACTTCCCCCCCACATCCTCACTGCTTTGGAGTAAACTTCTGATTGGCCCCTTACAACTGACTTCAAATGGATCATCTGACTTAAGAAGCTCCTGACAATCAGCAGGAAACAGGGATTTTCAGTGCCACAAATGCATCCACATTCCTGGTCAAACTGCTCCTTTGTTCATCTTGTCCATCTGAATAGCACAAGGTGAAGATACAGTTTTTCCATTTGGTCTTCTGACCAAAAGGCTTCTTTTGCAATGCTTAATTTGTCGTCACTTCCTTTAAAAAGGAATTTGGGGGTATTTCACTGAGGACAAATTTCGCAAATTTCCCTGACCTTTTCCGGGATTTTGGCAGCCATTCCATAGGACACAACTTTACCTTAGGAAATAGAAATAGCAAAAACAGAAGAATGTAGCTTTCTGCTTCGTATGTGTTCTCTTCTTTACAATGGCTGAGCCTGAGTGTCTTTTGGTGAGTTGAGCATAATATCTGTTATATAAATGAAGTGTTATATAACATTTCCTCATCTATTTGCTCTGACAGAACAACAAAATGCCTATCATTTTAAGATTTAACCTTGGGTACAGTGGATACTGTTTCTTTCTAACCATTTGTTCAGTTCCttagctttacagaaaacttgaaTTATTTTAGATTGTgaagtgtacatttttaattagcTCTTTCTCTAAAGGTGCTATCACATACAATAACTAATTTGGTTATCATGAATACTTACAGTTGTGGAAGCAGGGGCATGGTCGAGTGCCAGTTTGTGAATGGGAGGCAGAgccggagaaggtgagtggtaaggattaCACACCTGTGGGGAATTTGACTAAcaagtgttctgtgtttcagtgagtgaCAGCAAGGAATAAAGAGGGGAGAGACAAGAGCCTCGAGGGGGTTAGAGCTGAGCGGCACAGAGccgcgtgtgtgcatgtgcatgtgcaaagtgcaataaaatcactgaaaaGAGAAGTGTTACACTGGCGCCGAAACCCCGGGAGTGAGGTAGAACCGCCGTTATGGAGTCCTCGCATTAACGTCCTAGCGGAGATCGTCAAGTCCATTGCCAGCCTTCACCAGACTCAACATCAGGCCCTCCTCGAACTACGGACAGAGCAGGAACAGCGCTTCCAGGCCCTGCTCCAAGCCAAGGCAGAGGACCAGCAAGTGCTCCGGAGCCTGGTCCAGCCGGCAGGTACTCCAGCAGCAGCCGCAGCAGCCATGCCCCACATCATGCTGCTCAAGACGGGGCCACATGATGACCTGGAAGCATTCCTGAAACTTTTTGAGCGTGCTGTGGAAGCTTGGGGCTGGCCCAACTCGCAGTACTGCTACTGTTGAGGAAAGTCCAGCTCGTGGCCCAACAGCTTCCTGTGGTGAACCTGCTGGAGTACTGGTTGCTCCCAAATTGTGACAACAATCTGCCgaattcttcatatgtctgggctgcggggtagggtggcaagacAGAAGccttttttaaccaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25498 lncRNA downstream 35224 4009131 ~ 4009340 (-) True G21382
TU25493 lncRNA downstream 44928 3993879 ~ 3999636 (-) True G21377
TU25470 lncRNA downstream 111996 3932136 ~ 3932568 (-) True G21358
TU25413 lncRNA downstream 259010 3785140 ~ 3785554 (-) True G21306
TU25404 lncRNA downstream 329521 3713299 ~ 3715043 (-) True G21303
TU25521 lncRNA upstream 28910 4077128 ~ 4077827 (-) True G21400
TU25449 lncRNA upstream 63064 4111282 ~ 4111654 (-) True G21341
TU25441 lncRNA upstream 74777 4122995 ~ 4127844 (-) True G21333
TU25539 lncRNA upstream 98518 4146736 ~ 4153896 (-) True G21417
TU25534 lncRNA upstream 120784 4169002 ~ 4244436 (-) True G21413
XM_026945639.2 mRNA downstream 5280 4034071 ~ 4039284 (-) True cldn10a
XM_026945452.2 mRNA downstream 18586 4023790 ~ 4025978 (-) True si:busm1-52i16.2
XM_026945608.2 mRNA downstream 35987 4004622 ~ 4008577 (-) False si:ch211-181l5.2
XM_026945607.2 mRNA downstream 35987 4004622 ~ 4008577 (-) True si:ch211-181l5.2
XM_034314254.1 mRNA downstream 85746 3938000 ~ 3958818 (-) False stx16
XM_026945430.2 mRNA upstream 310902 4359120 ~ 4365171 (-) True prelid3b
XM_034310026.1 mRNA upstream 310902 4359120 ~ 4365128 (-) False prelid3b
XM_026945646.2 mRNA upstream 427634 4475852 ~ 4483914 (-) True LOC113545959
XM_026945449.2 mRNA upstream 542166 4590384 ~ 4618467 (-) True igfbp2a
XM_026945422.2 mRNA upstream 669192 4717410 ~ 4719627 (-) True inha
XR_004579840.1 other downstream 266576 3750018 ~ 3777988 (-) True rab22a
XR_004580246.1 other downstream 307678 3717715 ~ 3736886 (-) False npepl1
trnaf-gaa_13 other downstream 1007208 3037284 ~ 3037356 (-) True trnaf-gaa_13
TU24006 other downstream 2222002 1812759 ~ 1822562 (-) False slc9a7
TU23548 other downstream 3006990 1028859 ~ 1037574 (-) False slc48a1b
TU25557 other upstream 208450 4256668 ~ 4257087 (-) True G21434
trnaf-gaa_14 other upstream 283881 4332099 ~ 4332171 (-) True trnaf-gaa_14
XR_004577457.1 other upstream 399149 4447367 ~ 4447479 (-) True LOC117596284
XR_004577458.1 other upstream 410118 4458336 ~ 4458447 (-) True LOC117596286
XR_003404665.2 other upstream 765057 4813275 ~ 4902011 (-) False obsl1a

Expression Profile