RNA id: XR_004579529.1


Basic Information

Item Value
RNA id XR_004579529.1
length 235
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC117599087
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16489078 ~ 16494312 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGGGGCTTTACTGTTGAGAGAAGCCGCGCGCGACGCTTCAGTTGTAGCGGTGAAAGAGCGCGAGATTGGATTTTTGTCCTTCCACAGTATAGACCCTCCTTCAAGGTTTGGCTACCAAGTTCCTGGCTCCTAGTGAGATTATCCAAGGATCATTCTCTATGGAGAGCACTATAGCTTGCCCCTTTATTAATCTTCTCTGCCGCTATTCCACCCCATTCATGGCACAACAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33555 lncRNA upstream 48307 16436121 ~ 16440771 (+) True G28446
TU33520 lncRNA upstream 87967 16398430 ~ 16401111 (+) False tomm6
TU33525 lncRNA upstream 87967 16398430 ~ 16401111 (+) False tomm6
TU33523 lncRNA upstream 88012 16398245 ~ 16401066 (+) True tomm6
TU33701 lncRNA downstream 39563 16533875 ~ 16535345 (+) True G28574
TU33821 lncRNA downstream 234902 16729214 ~ 16731205 (+) True G28676
XR_003402553.1 lncRNA downstream 347932 16842244 ~ 16843385 (+) True LOC113524191
TU34038 lncRNA downstream 558618 17052930 ~ 17053746 (+) True G28865
TU34067 lncRNA downstream 605914 17100226 ~ 17137850 (+) True G28889
XM_026926533.2 mRNA upstream 13932 16464943 ~ 16475146 (+) True lrrc41
XM_026943326.2 mRNA upstream 25542 16460401 ~ 16463536 (+) True LOC113544464
XM_026938693.2 mRNA upstream 87979 16398409 ~ 16401099 (+) False tomm6
XM_026938484.2 mRNA upstream 95071 16391412 ~ 16394007 (+) True tspo
XM_026938572.2 mRNA upstream 95071 16391415 ~ 16394007 (+) False tspo
XM_026913984.2 mRNA downstream 559820 17054132 ~ 17066099 (+) True hyi
XM_034298932.1 mRNA downstream 684931 17179243 ~ 17184683 (+) True LOC117595909
XM_034298935.1 mRNA downstream 684932 17179244 ~ 17184681 (+) False LOC117595909
XM_026917771.2 mRNA downstream 898017 17392329 ~ 17396139 (+) True glulb
XM_026917748.2 mRNA downstream 939036 17433348 ~ 17437899 (+) True znf648
TU33403 other upstream 306775 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 1194724 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 1297422 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2987782 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 2989713 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 2280458 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2323090 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3040129 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3615818 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 4520546 21014858 ~ 21017447 (+) False insl5a

Expression Profile