Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579611.1 |
| length | 522 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 3 |
| gene id | LOC117599173 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 22988121 ~ 23026499 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU37722 | lncRNA | upstream | 177115 | 22809395 ~ 22811006 (+) | True | G31979 |
| TU37666 | lncRNA | upstream | 402931 | 22582349 ~ 22585190 (+) | True | G31944 |
| TU37582 | lncRNA | upstream | 474108 | 22504504 ~ 22514013 (+) | True | G31878 |
| TU37560 | lncRNA | upstream | 502674 | 22481404 ~ 22485447 (+) | True | G31856 |
| TU37451 | lncRNA | upstream | 662784 | 22325121 ~ 22325337 (+) | True | G31760 |
| XR_003403844.2 | lncRNA | downstream | 151433 | 23177932 ~ 23187094 (+) | True | LOC113538428 |
| TU38127 | lncRNA | downstream | 429461 | 23455960 ~ 23458710 (+) | False | G32310 |
| TU38129 | lncRNA | downstream | 429571 | 23456070 ~ 23459381 (+) | True | G32310 |
| TU38294 | lncRNA | downstream | 489905 | 23516404 ~ 23560789 (+) | True | G32466 |
| TU38297 | lncRNA | downstream | 504803 | 23531302 ~ 23560789 (+) | False | G32466 |
| XM_026933585.2 | mRNA | upstream | 260673 | 22604981 ~ 22727448 (+) | False | mast2 |
| XM_034310314.1 | mRNA | downstream | 1463 | 23027962 ~ 23043087 (+) | False | LOC113538154 |
| XM_034310317.1 | mRNA | downstream | 1463 | 23027962 ~ 23043087 (+) | False | LOC113538154 |
| XM_026933025.2 | mRNA | downstream | 1464 | 23027963 ~ 23045394 (+) | True | LOC113538154 |
| XM_026933081.2 | mRNA | downstream | 45622 | 23072121 ~ 23085157 (+) | False | orc1 |
| XM_026933083.2 | mRNA | downstream | 45622 | 23072121 ~ 23085157 (+) | False | orc1 |
| XR_004579462.1 | other | upstream | 385783 | 22598341 ~ 22602338 (+) | False | tmem69 |
| TU36319 | other | upstream | 1970674 | 21014858 ~ 21017447 (+) | False | insl5a |
| XR_003403752.1 | other | upstream | 2877896 | 20110130 ~ 20110225 (+) | True | LOC113537321 |
| TU35395 | other | upstream | 3451107 | 19534441 ~ 19537014 (+) | False | smx5 |
| trnai-aau | other | upstream | 4170646 | 18817402 ~ 18817475 (+) | True | trnai-aau |
| trnaf-gaa_16 | other | downstream | 449452 | 23475951 ~ 23476023 (+) | True | trnaf-gaa_16 |
| TU38551 | other | downstream | 993879 | 24020378 ~ 24021036 (+) | True | G32684 |
| TU38758 | other | downstream | 1626491 | 24652990 ~ 24653965 (+) | False | LOC117598985 |
| TU38760 | other | downstream | 1626686 | 24653185 ~ 24653965 (+) | False | LOC117598985 |
| XR_003403845.2 | other | downstream | 3587151 | 26613650 ~ 26629851 (+) | False | st6gal2b |
