RNA id: XR_004579661.1


Basic Information

Item Value
RNA id XR_004579661.1
length 1232
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id LOC117599214
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20770555 ~ 20781908 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTAACGTTTTGGTCAAAATGTAATATAGCTGAATtcacctgtaaaaaaaaactgcattattgtaatgaaataataaagaataccAGACAAACGTGtaacaaaataatcagtttaacaggaaaaaagtaacaacaaacaaaaataacataaatgcAGGCTATCTCCTATACTTTTAGGGAAAAAGTTAAATCTACAACCCAATCCCACAATGGAGGCTTTTCCTTCCAGGTAATCAGGTCCCCTTGAGTTCTGCATTCAAAGCTGGCAAGCCAATATATGATTCTACTGTGAAATGCCTCCAGAGCTCCTAAAGGGATTACATAGCCCACTGGCTCCTGCAATAAGTGAATACTGCTAAAGGTCTGTATTTACTCTGCAATTGCATCCTGATGCCTGCTCCTCCTGCACAGGGATTTACCAGGCAATTCAATAACTGCACACACAGCAACCACTTTTCATTGATCCTGCCTCATGAAGCTCTGTTCAAGCTCTGCGAAGGTCTCCTCATGTTGAACCACTTAGACTTGATTAAGCGAGTCAAAAATGTCATGAAGGCCTACACATTTGCCTGTATATTTCTCTAAGCTCTTTGTTACCATGGTAACCCTGTCTCTTGCCCTGTTCTCTCAGGCTGAGAGCACCGAGTTAAAGTACACTACAAAGGAAGGGGACAGCAGGATCAGACGCTTGTCCCATGGCCTTCATGTCAGCTAAATGATgatcaaaagaaaaacacagcaatTTACTGGATTTCAAGCTCAACTTTTACCAGCAAGGTAAATGAACAGATGATCAGACAGACAAAGCAGTGGATTACAGCAGACATACTGCGATGCTATtgatatcaggaaaaaaaaaaaaaaccttcattgTGTTAGGCTGCTGTGAAATTGAAATGTAGTGTACGTAAAATACACTAAACTTCAAAGTACTAAAAGCTTGCACAAAGAAAAAgatcaaaagataaaaaagactTGGGTTTATCATAAATACCTCTCCAAACAAGCTCTGTTTTAAAGAGTACTAGTTGCATACAGGAACAACTGCGGTAGACTGCCGGTTCTTGCAGAGGGCAAAGAGAGGGTAGAGCTCCACCTCATAGATCTTGCAGGTTAGACCTGTCCACTTCGAGTAGAATATCATGTAGTGGATATCCTGGGATCGTTGTCTCTTTCAGAAGATTAATGGCTGCCTCCTGtctccattctttttttttatgtaactggTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36141 lncRNA upstream 89825 20680400 ~ 20680770 (+) True G30620
TU36067 lncRNA upstream 112515 20575962 ~ 20658080 (+) False dlg1
TU36042 lncRNA upstream 263949 20506323 ~ 20506646 (+) True G30545
TU36040 lncRNA upstream 264958 20505039 ~ 20505637 (+) True G30543
TU36033 lncRNA upstream 283385 20484465 ~ 20487210 (+) True G30536
TU36246 lncRNA downstream 53579 20835487 ~ 20889710 (+) True G30715
TU36252 lncRNA downstream 66583 20848491 ~ 20851676 (+) True G30721
TU36280 lncRNA downstream 181524 20963432 ~ 20963641 (+) True G30747
TU36341 lncRNA downstream 311706 21093614 ~ 21093816 (+) True G30791
TU36879 lncRNA downstream 603098 21385006 ~ 21385342 (+) True G31260
XM_026921723.2 mRNA upstream 87104 20674401 ~ 20683491 (+) True lrrc40
XM_026916946.2 mRNA upstream 98849 20658819 ~ 20671746 (+) True meltf
XM_026916934.2 mRNA upstream 114843 20536975 ~ 20655752 (+) False dlg1
XM_034312229.1 mRNA downstream 42432 20824340 ~ 20868260 (+) True shroom2a
XM_034312242.1 mRNA downstream 49583 20831491 ~ 20868260 (+) False shroom2a
XM_034312244.1 mRNA downstream 49583 20831491 ~ 20868260 (+) False shroom2a
XM_034312234.1 mRNA downstream 72572 20854480 ~ 20868260 (+) False shroom2a
XM_034312249.1 mRNA downstream 72573 20854481 ~ 20868260 (+) False shroom2a
XR_003403752.1 other upstream 660370 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 1233581 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1943675 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1953120 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4588292 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 232950 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 1816433 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2694043 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3238470 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3871082 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile