RNA id: XR_004579681.1


Basic Information

Item Value
RNA id XR_004579681.1
length 1171
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC117599223
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15834478 ~ 15837386 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGtgtgaaagacagaaaatatGAAGAAACGCCATTGTGAGAATCAGGAGAGTAGTATATTGACAAATTTAGAGTCTGCGTGGAGAGAGGGCAGTCAGTAAAGACAACATCCCCGGTCGACCTTCAAATCACAAAGAACTCTATTGGAAGGAGTCCATAAAGACAATGAAGagagagagaaaatgggagGAATAGAGGAGAGAGTGTCCTTGGTGCTACTTCATGCTGAGTTTTGTCATCAATGCTGCAGACCATGAAGAGCATCTGAGTGTCCAAACGAGTGCAGGCTGGAACACACAGCACCTGAAGCAGCACTGCCGTGACGTACACACACCTCCAGGCTGGGATAAGCAGCACTCCGGAGAATTCTAATACCACAACCTGTCTGCACaacatggtctgtgaattccaCTCTACAGTTCAGCTACTTCACAGGACACACTACAAAATACTACTGGTACCCTGAAGAGGTGGCAATATCTATACTTCACCTGGAGCATTTACAGTATGACTTTTGACTTCTTGCTACAGCAACACAAGGGACACCAGAAAGCTATACCCTTCTCCCTTTTCAGCTAAAACAGTGGtcagaacaaacacaaataaaactggcTCAGCAGAAAAggcaattcactgaaggggaaaggacgcaggaCTTTGTGGaatttgacctgtgaattcatgaaTTTCAATCCTGTGAGTCAACACAAACCAAGAAGATGGGACTGTGGGTTCTTTGGtctgtaaaaaatggaaagCTGTTTATTAAGTAGCGGTCACATCAGACATTGGTGTACATCTGGGAAAAATTATCCTTCTTTTCCACCAACATACGTTGAGATTTTGTGCTAAAattctgctttttctctctgcctaCTAGAAGCTTTTTTGTTCGAACGGTGGGCACCACTGGATCACTGTTATATAATGTATTGAAAATGCGATAAAAGCATTCATGCTAaagaatgtattttaaatgcattgttAAGAACTATGATGATATATGTAGTTGGTTTATGTAGTCTGTAGCACTTCTTAATCAGAGGATGTAACTTAATTCATTGCTCAACATTTTTGTTAAGAAATtggaatttaaatgaaatattctcAGCTGGTACAGAGTGAGGGTGTAAATAGCAATAAGAGAATCTTACGTTGGTTTGGAAGCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33049 lncRNA upstream 44034 15788651 ~ 15790444 (+) False LOC113534559
TU33047 lncRNA upstream 55878 15776898 ~ 15778600 (+) True G28041
TU33046 lncRNA upstream 58629 15774376 ~ 15775849 (+) True G28040
TU32973 lncRNA upstream 217764 15615024 ~ 15616714 (+) True G27979
TU32743 lncRNA upstream 344714 15489536 ~ 15489764 (+) True G27769
XR_003403691.1 lncRNA downstream 59042 15896428 ~ 15908054 (+) True LOC113536643
XR_004579697.1 lncRNA downstream 105976 15943362 ~ 15960870 (+) True LOC117599231
TU33146 lncRNA downstream 175961 16013347 ~ 16014109 (+) True G28132
XR_004577052.1 lncRNA downstream 191748 16029134 ~ 16032135 (+) True LOC113533806
XR_003403456.2 lncRNA downstream 191748 16029134 ~ 16032135 (+) False LOC113533806
XM_026927452.2 mRNA upstream 44039 15788626 ~ 15790439 (+) True LOC113534559
XM_026936877.2 mRNA upstream 84985 15734844 ~ 15749493 (+) True hemk1
XM_026924038.2 mRNA upstream 373476 15456646 ~ 15461002 (+) True cav3
XM_026919013.2 mRNA upstream 381351 15451434 ~ 15453127 (+) True LOC113529636
XM_026923867.2 mRNA upstream 388308 15441220 ~ 15446170 (+) True gpr61l
XM_026923932.2 mRNA downstream 49787 15887173 ~ 15891814 (+) True LOC113532530
XM_026915455.2 mRNA downstream 155633 15993019 ~ 16010839 (+) True LOC113527532
XM_026915463.2 mRNA downstream 155634 15993020 ~ 16010839 (+) False LOC113527532
XM_034300857.1 mRNA downstream 198067 16035453 ~ 16048798 (+) False rab44
XM_034300866.1 mRNA downstream 198067 16035453 ~ 16048798 (+) False rab44
XR_004580083.1 other upstream 540124 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 642822 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2333182 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 2335113 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 343932 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 2937384 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2980016 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3697055 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 4272744 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile