Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579714.1 |
| length | 410 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC117599246 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 22227215 ~ 22231015 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579713.1 | lncRNA | upstream | 5689 | 22220382 ~ 22221526 (+) | True | LOC117599245 |
| TU37392 | lncRNA | upstream | 38712 | 22182204 ~ 22188503 (+) | True | G31704 |
| XR_004579707.1 | lncRNA | upstream | 61363 | 22164936 ~ 22165852 (+) | True | LOC117599240 |
| TU37381 | lncRNA | upstream | 78745 | 22148198 ~ 22148470 (+) | True | G31693 |
| TU37227 | lncRNA | upstream | 396276 | 21830726 ~ 21830939 (+) | True | G31567 |
| TU37435 | lncRNA | downstream | 86668 | 22317683 ~ 22322046 (+) | True | G31744 |
| TU37451 | lncRNA | downstream | 94106 | 22325121 ~ 22325337 (+) | True | G31760 |
| TU37560 | lncRNA | downstream | 250389 | 22481404 ~ 22485447 (+) | True | G31856 |
| TU37582 | lncRNA | downstream | 273489 | 22504504 ~ 22514013 (+) | True | G31878 |
| TU37666 | lncRNA | downstream | 351334 | 22582349 ~ 22585190 (+) | True | G31944 |
| XM_034314532.1 | mRNA | upstream | 107583 | 22109948 ~ 22119632 (+) | True | LOC117599931 |
| XM_026917138.2 | mRNA | upstream | 126110 | 22048516 ~ 22101105 (+) | True | kank4 |
| XM_026917154.2 | mRNA | upstream | 126110 | 22078733 ~ 22101105 (+) | False | kank4 |
| XM_026917147.2 | mRNA | upstream | 126110 | 22078774 ~ 22101105 (+) | False | kank4 |
| XM_034313266.1 | mRNA | upstream | 193125 | 21969974 ~ 22034090 (+) | True | dock7 |
| XM_026933381.2 | mRNA | downstream | 161813 | 22392828 ~ 22406479 (+) | True | cyldl |
| XM_026933384.2 | mRNA | downstream | 161813 | 22392828 ~ 22406479 (+) | False | cyldl |
| XM_026933383.2 | mRNA | downstream | 161813 | 22392828 ~ 22406479 (+) | False | cyldl |
| XM_026933385.2 | mRNA | downstream | 161813 | 22392828 ~ 22406479 (+) | False | cyldl |
| XM_026933382.2 | mRNA | downstream | 161813 | 22392828 ~ 22406479 (+) | False | cyldl |
| TU36319 | other | upstream | 1209768 | 21014858 ~ 21017447 (+) | False | insl5a |
| XR_003403752.1 | other | upstream | 2116990 | 20110130 ~ 20110225 (+) | True | LOC113537321 |
| TU35395 | other | upstream | 2690201 | 19534441 ~ 19537014 (+) | False | smx5 |
| TU34871 | other | upstream | 3400295 | 18774770 ~ 18826920 (+) | False | G29569 |
| XR_004579462.1 | other | downstream | 367326 | 22598341 ~ 22602338 (+) | False | tmem69 |
| trnaf-gaa_16 | other | downstream | 1244936 | 23475951 ~ 23476023 (+) | True | trnaf-gaa_16 |
| TU38551 | other | downstream | 1789363 | 24020378 ~ 24021036 (+) | True | G32684 |
| TU38758 | other | downstream | 2421975 | 24652990 ~ 24653965 (+) | False | LOC117598985 |
| TU38760 | other | downstream | 2422170 | 24653185 ~ 24653965 (+) | False | LOC117598985 |
