Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579880.1 |
| length | 540 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 4 |
| gene id | LOC117599465 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 5494925 ~ 5500908 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU26276 | lncRNA | upstream | 27444 | 5467266 ~ 5467481 (+) | True | G22036 |
| TU26269 | lncRNA | upstream | 31769 | 5437553 ~ 5463156 (+) | True | G22033 |
| TU26267 | lncRNA | upstream | 31769 | 5452363 ~ 5463156 (+) | False | G22033 |
| TU26271 | lncRNA | upstream | 51081 | 5437553 ~ 5443844 (+) | False | G22033 |
| TU26266 | lncRNA | upstream | 57456 | 5435766 ~ 5437469 (+) | True | G22032 |
| TU26261 | lncRNA | downstream | 737 | 5501645 ~ 5503231 (+) | True | atp5f1e |
| TU26298 | lncRNA | downstream | 47568 | 5548476 ~ 5610231 (+) | True | G22054 |
| TU26352 | lncRNA | downstream | 199820 | 5700728 ~ 5700976 (+) | True | G22097 |
| TU26366 | lncRNA | downstream | 208058 | 5708966 ~ 5709171 (+) | True | G22110 |
| TU26387 | lncRNA | downstream | 281398 | 5782306 ~ 5786459 (+) | True | G22123 |
| XM_034313088.1 | mRNA | upstream | 5401 | 5476750 ~ 5489524 (+) | True | chmp4ba |
| XM_026917112.2 | mRNA | upstream | 5401 | 5476756 ~ 5489524 (+) | False | chmp4ba |
| XM_034313879.1 | mRNA | upstream | 238946 | 5239845 ~ 5255979 (+) | True | nhej1 |
| XM_026917125.2 | mRNA | downstream | 744 | 5501652 ~ 5502394 (+) | False | atp5f1e |
| XM_034312823.1 | mRNA | downstream | 22016 | 5522924 ~ 5538437 (+) | False | ergic3 |
| XM_026915801.2 | mRNA | downstream | 22017 | 5522925 ~ 5538437 (+) | True | ergic3 |
| XM_026915809.2 | mRNA | downstream | 22017 | 5522925 ~ 5538437 (+) | False | ergic3 |
| XM_026912152.2 | mRNA | downstream | 48932 | 5549840 ~ 5552974 (+) | False | mych |
| TU26124 | other | upstream | 286061 | 5208346 ~ 5208864 (+) | True | G21901 |
| TU26030 | other | upstream | 406347 | 5088134 ~ 5088578 (+) | True | G21835 |
| XR_004579614.1 | other | upstream | 735280 | 4754266 ~ 4759645 (+) | True | spega |
| XR_003404681.1 | other | upstream | 834802 | 4660009 ~ 4660123 (+) | True | LOC113545978 |
| trnah-gug_1 | other | upstream | 1143177 | 4351677 ~ 4351748 (+) | True | trnah-gug_1 |
| XR_003402786.2 | other | downstream | 216622 | 5717530 ~ 5753104 (+) | False | rbl1 |
| TU28587 | other | downstream | 3950017 | 9450925 ~ 9454462 (+) | False | hmga1b |
| TU28588 | other | downstream | 3950017 | 9450925 ~ 9454462 (+) | True | hmga1b |
| XR_004577034.1 | other | downstream | 4091033 | 9591941 ~ 9596854 (+) | False | LOC113532547 |
| TU28879 | other | downstream | 4394337 | 9895245 ~ 9907171 (+) | False | LOC113530691 |
