Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580201.1 |
| length | 284 |
| lncRNA type | inter_gene |
| GC content | 0.50 |
| exon number | 3 |
| gene id | LOC117599889 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 21636184 ~ 21642350 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU37020 | lncRNA | upstream | 23306 | 21609233 ~ 21612878 (+) | True | G31384 |
| XR_004580180.1 | lncRNA | upstream | 229798 | 21402242 ~ 21406386 (+) | True | LOC113526220 |
| XR_003402742.2 | lncRNA | upstream | 229798 | 21403473 ~ 21406386 (+) | False | LOC113526220 |
| TU36879 | lncRNA | upstream | 250842 | 21385006 ~ 21385342 (+) | True | G31260 |
| TU36341 | lncRNA | upstream | 542368 | 21093614 ~ 21093816 (+) | True | G30791 |
| TU37225 | lncRNA | downstream | 184148 | 21826498 ~ 21826735 (+) | True | G31565 |
| TU37227 | lncRNA | downstream | 188376 | 21830726 ~ 21830939 (+) | True | G31567 |
| TU37381 | lncRNA | downstream | 505848 | 22148198 ~ 22148470 (+) | True | G31693 |
| XR_004579707.1 | lncRNA | downstream | 522586 | 22164936 ~ 22165852 (+) | True | LOC117599240 |
| TU37392 | lncRNA | downstream | 539854 | 22182204 ~ 22188503 (+) | True | G31704 |
| XM_026923022.2 | mRNA | upstream | 188101 | 21408754 ~ 21448083 (+) | True | jak1 |
| XM_026923012.2 | mRNA | upstream | 188101 | 21408754 ~ 21448083 (+) | False | jak1 |
| XM_026918093.2 | mRNA | upstream | 618317 | 21014838 ~ 21017867 (+) | True | insl5a |
| XM_026918107.2 | mRNA | upstream | 624454 | 20999483 ~ 21011730 (+) | True | wdr78 |
| XM_026913045.2 | mRNA | upstream | 647317 | 20982532 ~ 20988867 (+) | True | ttc22 |
| XM_034314527.1 | mRNA | downstream | 141442 | 21783792 ~ 21795509 (+) | True | si:dkey-148h10.5 |
| XM_034313266.1 | mRNA | downstream | 327624 | 21969974 ~ 22034090 (+) | True | dock7 |
| XM_026917138.2 | mRNA | downstream | 406166 | 22048516 ~ 22101105 (+) | True | kank4 |
| XM_026917154.2 | mRNA | downstream | 436383 | 22078733 ~ 22101105 (+) | False | kank4 |
| XM_026917147.2 | mRNA | downstream | 436424 | 22078774 ~ 22101105 (+) | False | kank4 |
| TU36319 | other | upstream | 618737 | 21014858 ~ 21017447 (+) | False | insl5a |
| XR_003403752.1 | other | upstream | 1525959 | 20110130 ~ 20110225 (+) | True | LOC113537321 |
| TU35395 | other | upstream | 2099170 | 19534441 ~ 19537014 (+) | False | smx5 |
| TU34871 | other | upstream | 2809264 | 18774770 ~ 18826920 (+) | False | G29569 |
| XR_004579462.1 | other | downstream | 955991 | 22598341 ~ 22602338 (+) | False | tmem69 |
| trnaf-gaa_16 | other | downstream | 1833601 | 23475951 ~ 23476023 (+) | True | trnaf-gaa_16 |
| TU38551 | other | downstream | 2378028 | 24020378 ~ 24021036 (+) | True | G32684 |
| TU38758 | other | downstream | 3010640 | 24652990 ~ 24653965 (+) | False | LOC117598985 |
| TU38760 | other | downstream | 3010835 | 24653185 ~ 24653965 (+) | False | LOC117598985 |
