RNA id: trnaf-gaa_13


Basic Information

Item Value
RNA id trnaf-gaa_13
length 73
RNA type tRNA
GC content 0.53
exon number 1
gene id trnaf-gaa_13
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3037284 ~ 3037356 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTaaaggtccctggttcgatcccgGGTTTCGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24760 lncRNA downstream 88883 2948178 ~ 2948401 (-) True G20801
TU24621 lncRNA downstream 290192 2745608 ~ 2747092 (-) True G20675
TU24582 lncRNA downstream 374654 2662312 ~ 2662630 (-) True G20644
TU24581 lncRNA downstream 375579 2661434 ~ 2661705 (-) True G20643
TU24568 lncRNA downstream 403604 2604707 ~ 2633680 (-) False LOC113545802
TU24911 lncRNA upstream 25894 3063250 ~ 3064519 (-) True G20920
TU24912 lncRNA upstream 25894 3063250 ~ 3064519 (-) False G20920
TU24955 lncRNA upstream 48248 3085604 ~ 3085949 (-) True G20942
TU24958 lncRNA upstream 55319 3092675 ~ 3093630 (-) True G20945
TU24969 lncRNA upstream 118971 3156327 ~ 3165752 (-) True G20951
XM_026945502.2 mRNA downstream 233679 2759853 ~ 2803605 (-) False slc4a8
XM_026945501.2 mRNA downstream 233766 2759853 ~ 2803518 (-) False slc4a8
XM_034312792.1 mRNA downstream 249057 2759853 ~ 2788227 (-) False slc4a8
XM_034312787.1 mRNA downstream 249058 2759853 ~ 2788226 (-) False slc4a8
XM_034312803.1 mRNA downstream 249595 2759853 ~ 2787689 (-) True slc4a8
XM_026945442.2 mRNA upstream 6651 3044007 ~ 3052277 (-) False tatdn2
XM_026945444.2 mRNA upstream 6651 3044007 ~ 3052123 (-) False tatdn2
XM_026945445.2 mRNA upstream 6651 3044007 ~ 3052123 (-) False tatdn2
XM_026945441.2 mRNA upstream 6651 3044007 ~ 3052123 (-) True tatdn2
XM_026945443.2 mRNA upstream 6651 3044007 ~ 3049805 (-) False tatdn2
TU24006 other downstream 1214722 1812759 ~ 1822562 (-) False slc9a7
TU23548 other downstream 1999710 1028859 ~ 1037574 (-) False slc48a1b
trnaq-uug_1 other downstream 2075677 961536 ~ 961607 (-) True trnaq-uug_1
XR_004577153.1 other downstream 2384266 652731 ~ 653018 (-) True LOC117595970
XR_004577109.1 other downstream 2439475 596887 ~ 597809 (-) False LOC113545844
XR_004580246.1 other upstream 680359 3717715 ~ 3736886 (-) False npepl1
XR_004579840.1 other upstream 712662 3750018 ~ 3777988 (-) True rab22a
TU25557 other upstream 1219312 4256668 ~ 4257087 (-) True G21434
trnaf-gaa_14 other upstream 1294743 4332099 ~ 4332171 (-) True trnaf-gaa_14
XR_004577457.1 other upstream 1410011 4447367 ~ 4447479 (-) True LOC117596284