Gene
RNA
| Item | Value |
|---|---|
| RNA id | trnap-ugg |
| length | 72 |
| RNA type | tRNA |
| GC content | 0.61 |
| exon number | 1 |
| gene id | trnap-ugg |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 18817127 ~ 18817198 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579394.1 | lncRNA | downstream | 315 | 18794025 ~ 18816812 (-) | True | LOC113537624 |
| XR_004579395.1 | lncRNA | downstream | 9237 | 18794025 ~ 18807890 (-) | False | LOC113537624 |
| TU34889 | lncRNA | downstream | 10377 | 18794032 ~ 18806750 (-) | False | LOC113537624 |
| XR_003403788.2 | lncRNA | downstream | 10679 | 18794025 ~ 18806448 (-) | False | LOC113537624 |
| XR_004579393.1 | lncRNA | downstream | 10711 | 18794025 ~ 18806416 (-) | False | LOC113537624 |
| TU34947 | lncRNA | upstream | 66786 | 18883984 ~ 18887011 (-) | True | G29612 |
| TU34949 | lncRNA | upstream | 73519 | 18890717 ~ 18895805 (-) | True | G29614 |
| TU35046 | lncRNA | upstream | 166864 | 18984062 ~ 19049735 (-) | True | G29678 |
| TU35173 | lncRNA | upstream | 441752 | 19258950 ~ 19259178 (-) | True | G29793 |
| XR_004577309.1 | lncRNA | upstream | 566116 | 19383314 ~ 19385251 (-) | True | LOC117596148 |
| XM_026912723.2 | mRNA | downstream | 126045 | 18688598 ~ 18691082 (-) | True | sox14 |
| XM_026927315.2 | mRNA | downstream | 193519 | 18615977 ~ 18623608 (-) | True | LOC113534471 |
| XM_026916472.2 | mRNA | downstream | 230901 | 18502917 ~ 18586226 (-) | False | hs2st1b |
| XM_026916382.2 | mRNA | downstream | 231365 | 18501538 ~ 18585762 (-) | True | hs2st1b |
| XM_026920872.2 | mRNA | downstream | 352556 | 18449257 ~ 18464571 (-) | True | lmo4b |
| XM_034312132.1 | mRNA | upstream | 2859 | 18820057 ~ 18835789 (-) | True | hdlbpa |
| XM_026927091.2 | mRNA | upstream | 99427 | 18916625 ~ 18927201 (-) | True | stk25a |
| XM_026916714.2 | mRNA | upstream | 140575 | 18957773 ~ 18961671 (-) | True | dtymk |
| XM_034310739.1 | mRNA | upstream | 147093 | 18964291 ~ 18969451 (-) | True | agxta |
| XM_034310741.1 | mRNA | upstream | 147095 | 18964293 ~ 18969447 (-) | False | agxta |
| trnag-ucc | other | downstream | 797 | 18816259 ~ 18816330 (-) | True | trnag-ucc |
| TU34886 | other | downstream | 10377 | 18794032 ~ 18806750 (-) | False | LOC113537624 |
| trnae-cuc_6 | other | downstream | 239832 | 18577224 ~ 18577295 (-) | True | trnae-cuc_6 |
| TU34546 | other | downstream | 744218 | 18070987 ~ 18072909 (-) | True | G29279 |
| TU34529 | other | downstream | 867409 | 17949157 ~ 17949718 (-) | True | G29263 |
| trnap-ugg_1 | other | upstream | 563243 | 19380441 ~ 19380512 (-) | True | trnap-ugg_1 |
| trnap-cgg_1 | other | upstream | 569244 | 19386442 ~ 19386513 (-) | True | trnap-cgg_1 |
| XR_004580158.1 | other | upstream | 2646663 | 21463861 ~ 21531428 (-) | False | raver2 |
| XR_004580163.1 | other | upstream | 2646663 | 21463861 ~ 21531428 (-) | False | raver2 |
| XR_004580160.1 | other | upstream | 2646663 | 21463861 ~ 21531428 (-) | False | raver2 |
