RNA id: TU258381


Basic Information

Item Value
RNA id TU258381
length 836
RNA type TUCP
GC content 0.54
exon number 8
gene id dpf1
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 635615 ~ 684458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCATGTACAATACCGGGGATCTGCAGCTCTCACACATTCTATCATTCCGTGTGAAAAATGGCCACAGCAGTGCAGAACCCTCCGAAATCGCAGTCGAGTGGAACAGTCATAAAGAACAGCCTGGGCGAGGAGTTTTATCGTGAGGCGATTGAACATTGCAGAAGCTACAATGCTCGCCTGTGTGCCGAGCGCTCCATGCGTCTGCCCTTCCTGGACTCACAGACTGGCGTGGCACAGAGCAACTGCTACATCTGGATGGAGAAGAACCACCGAGGcccagGTGTGTCTCCGGGGCAGCTGTACACTTACCCAGCTCGCTGCTGGCGTAAGAAAAAACGGTTAAACATCCTGGACGATCCGCGTCTGGGACCCATCGAGTTTAAGATAGactACGAGTCTGCCCTGAAGAAGGAGGGAGGTGTTCCTGAGGGTCCCGTCCTTGAGTCTCTGCTCAGTGGAGAGCCTTTAGATAAGAAAGTGGAGACGAAGGAGGAGGAGGCCATGAGCGAGTGTCAGaagCTGCTAGTGGGAGACTTTCCTCATGAGCTGGACATGGAAGAAATGGAGGAGGACGTGCCTAAGCGCAAGAACCGCACCAAAGGACGGGCTTGCGGTGTAGGAGGAATGAGGAAGAGACAGGAACCGGCCTCCATAGAGGACAGAGACAAGCCATACGTTTGTGACAtctGCGGTAAGCGCTACAAGAACCGCCCAGGTTTGAGTTaccactacactcacacacacctggcagACGAAGAGGGTGAAGAAGACTCGGAACGACACACTCTACCCTTTCAACGCAAGAACAACCACAAgcgtatgtctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258291 lncRNA downstream 243061 388703 ~ 411051 (-) True G218066
TU258289 lncRNA downstream 271808 381748 ~ 382304 (-) True G218064
TU258239 lncRNA downstream 395171 252132 ~ 258941 (-) True G218024
TU258243 lncRNA downstream 439141 214451 ~ 214971 (-) True G218028
TU257533 lncRNA downstream 580954 69744 ~ 73158 (-) True G217401
TU258409 lncRNA upstream 28599 712954 ~ 715590 (-) False numbl
TU258419 lncRNA upstream 47007 731362 ~ 741843 (-) True G218184
TU258423 lncRNA upstream 47161 731516 ~ 736893 (-) True G218185
TU258424 lncRNA upstream 47563 731918 ~ 736893 (-) False G218185
TU258426 lncRNA upstream 49262 733617 ~ 738218 (-) True G218187
XM_026943526.2 mRNA downstream 26294 626147 ~ 627818 (-) True si:dkey-243k1.3
XM_026943426.2 mRNA downstream 31500 611024 ~ 622612 (-) True pnkp
XM_026943428.2 mRNA downstream 31502 611024 ~ 622610 (-) False pnkp
XM_026943306.2 mRNA downstream 81683 567507 ~ 572429 (-) True trappc6bl
XM_026943510.2 mRNA downstream 100640 551015 ~ 553472 (-) True zgc:114130
XM_034310820.1 mRNA upstream 28540 712895 ~ 747257 (-) True numbl
XM_026943289.2 mRNA upstream 88611 772966 ~ 786174 (-) True coq8b
XM_026943580.2 mRNA upstream 110570 794925 ~ 807926 (-) True slc5a2
XM_026943578.2 mRNA upstream 126543 810898 ~ 818662 (-) False si:dkey-260j18.2
XM_026943579.2 mRNA upstream 126543 810898 ~ 818662 (-) True si:dkey-260j18.2
trnae-cuc_27 other downstream 422301 231740 ~ 231811 (-) True trnae-cuc_27
TU258469 other upstream 194417 878772 ~ 879183 (-) True G218214
TU258537 other upstream 395933 1080288 ~ 1134018 (-) True G218265
TU258580 other upstream 470055 1154410 ~ 1154700 (-) True G218302
trnag-ucc_16 other upstream 811407 1495762 ~ 1495833 (-) True trnag-ucc_16
trnag-ucc_17 other upstream 812681 1497036 ~ 1497106 (-) False trnag-ucc_17

Expression Profile