RNA id: TU258426


Basic Information

Item Value
RNA id TU258426
length 639
lncRNA type intronic
GC content 0.44
exon number 3
gene id G218187
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 733617 ~ 738218 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgttctgtttttaactgtgtagcgtaacactgttctgttttgggctgtgtagcgtaacactgttgtgttttcggctgtgtagcgtaacactgttctgttttcggctgtgtagcgtaatattgttctgttttgggctatGTAGCGTAATATTGTTCTATTctcggctgtgtagcgtaacacttgTGTTctcggctgtgtagcgcaacactgttgtgtttttaactgTGTAGCGtaatactgttgtgttttttactgTGTAGCTTAACAcggttctgttttgggctgtgtagcgtaacagtgttgtgtttttaactgtgttgcgtaacactgttctgttttcggctgtgtagcataacacagttctgttttgggctgtgtagcgtaacactgttctgttttgggctgtgtagcgtaacacagttctgttttgggctgtgtagcgtaacactgttctgttttgggctgtgtagcgtaacactgttctgttttgggctgtgtagcgcaacacagttctgttttgggctgtgtagcgtaacactgttgtgttttcggctgtgtagcgcaacactgttctgttttgggctgtgtagcgtaacactgttctgttttcggctgtgtagcgtaacactgttctgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258409 lncRNA downstream 18027 712954 ~ 715590 (-) False numbl
TU258291 lncRNA downstream 322566 388703 ~ 411051 (-) True G218066
TU258289 lncRNA downstream 351313 381748 ~ 382304 (-) True G218064
TU258239 lncRNA downstream 474676 252132 ~ 258941 (-) True G218024
TU258243 lncRNA downstream 518646 214451 ~ 214971 (-) True G218028
TU258434 lncRNA upstream 53555 791773 ~ 863445 (-) True G218191
TU258460 lncRNA upstream 109178 847396 ~ 847640 (-) True G218208
TU258486 lncRNA upstream 217293 955511 ~ 1009502 (-) False mecom
TU258540 lncRNA upstream 354573 1092791 ~ 1093179 (-) True G218268
XR_004579531.1 lncRNA upstream 385211 1123429 ~ 1127973 (-) True LOC117599090
XM_034310647.1 mRNA downstream 49159 635615 ~ 684458 (-) True dpf1
XM_026943526.2 mRNA downstream 105799 626147 ~ 627818 (-) True si:dkey-243k1.3
XM_026943426.2 mRNA downstream 111005 611024 ~ 622612 (-) True pnkp
XM_026943428.2 mRNA downstream 111007 611024 ~ 622610 (-) False pnkp
XM_026943306.2 mRNA downstream 161188 567507 ~ 572429 (-) True trappc6bl
XM_026943289.2 mRNA upstream 34748 772966 ~ 786174 (-) True coq8b
XM_026943580.2 mRNA upstream 56707 794925 ~ 807926 (-) True slc5a2
XM_026943578.2 mRNA upstream 72680 810898 ~ 818662 (-) False si:dkey-260j18.2
XM_026943579.2 mRNA upstream 72680 810898 ~ 818662 (-) True si:dkey-260j18.2
XM_034310804.1 mRNA upstream 85511 823729 ~ 853826 (-) True agfg1a
TU258381 other downstream 49262 654112 ~ 684355 (-) False dpf1
trnae-cuc_27 other downstream 501806 231740 ~ 231811 (-) True trnae-cuc_27
TU258469 other upstream 140554 878772 ~ 879183 (-) True G218214
TU258537 other upstream 342070 1080288 ~ 1134018 (-) True G218265
TU258580 other upstream 416192 1154410 ~ 1154700 (-) True G218302
trnag-ucc_16 other upstream 757544 1495762 ~ 1495833 (-) True trnag-ucc_16
trnag-ucc_17 other upstream 758818 1497036 ~ 1497106 (-) False trnag-ucc_17

Expression Profile