Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU258486 |
| length | 291 |
| lncRNA type | sense_over |
| GC content | 0.36 |
| exon number | 2 |
| gene id | mecom |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 955480 ~ 1102884 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU258434 | lncRNA | downstream | 92066 | 791773 ~ 863445 (-) | True | G218191 |
| TU258460 | lncRNA | downstream | 107871 | 847396 ~ 847640 (-) | True | G218208 |
| TU258419 | lncRNA | downstream | 213668 | 731362 ~ 741843 (-) | True | G218184 |
| TU258428 | lncRNA | downstream | 215513 | 734370 ~ 739998 (-) | True | G218188 |
| TU258426 | lncRNA | downstream | 217293 | 733617 ~ 738218 (-) | True | G218187 |
| TU258540 | lncRNA | upstream | 83289 | 1092791 ~ 1093179 (-) | True | G218268 |
| XR_004579531.1 | lncRNA | upstream | 113927 | 1123429 ~ 1127973 (-) | True | LOC117599090 |
| TU258584 | lncRNA | upstream | 151211 | 1160713 ~ 1161109 (-) | True | G218306 |
| TU258603 | lncRNA | upstream | 208729 | 1218231 ~ 1227815 (-) | True | G218324 |
| TU258604 | lncRNA | upstream | 211651 | 1221153 ~ 1222614 (-) | True | G218325 |
| XM_034310906.1 | mRNA | downstream | 78566 | 863690 ~ 876945 (-) | False | mffa |
| XM_034310905.1 | mRNA | downstream | 78566 | 863690 ~ 876945 (-) | False | mffa |
| XM_034310904.1 | mRNA | downstream | 78566 | 863690 ~ 876945 (-) | False | mffa |
| XM_034310903.1 | mRNA | downstream | 78566 | 863690 ~ 876945 (-) | True | mffa |
| XM_026943423.2 | mRNA | downstream | 93916 | 857338 ~ 861595 (-) | True | mrpl44 |
| XM_034310853.1 | mRNA | upstream | 107852 | 1117354 ~ 1119675 (-) | True | LOC113533231 |
| XM_034310854.1 | mRNA | upstream | 110290 | 1119792 ~ 1121387 (-) | True | LOC117599093 |
| XM_034310855.1 | mRNA | upstream | 111580 | 1121082 ~ 1122737 (-) | True | LOC117599094 |
| XM_026943414.2 | mRNA | upstream | 188611 | 1198113 ~ 1217196 (-) | True | irs1 |
| XM_034310856.1 | mRNA | upstream | 225405 | 1234907 ~ 1290435 (-) | True | col4a4 |
| TU258469 | other | downstream | 76328 | 878772 ~ 879183 (-) | True | G218214 |
| TU258381 | other | downstream | 271156 | 654112 ~ 684355 (-) | False | dpf1 |
| trnae-cuc_27 | other | downstream | 723700 | 231740 ~ 231811 (-) | True | trnae-cuc_27 |
| TU258537 | other | upstream | 70786 | 1080288 ~ 1134018 (-) | True | G218265 |
| TU258580 | other | upstream | 144908 | 1154410 ~ 1154700 (-) | True | G218302 |
| trnag-ucc_16 | other | upstream | 486260 | 1495762 ~ 1495833 (-) | True | trnag-ucc_16 |
| trnag-ucc_17 | other | upstream | 487534 | 1497036 ~ 1497106 (-) | False | trnag-ucc_17 |
| trnag-ucc_18 | other | upstream | 487838 | 1497340 ~ 1497411 (-) | True | trnag-ucc_18 |
