RNA id: XM_034310748.1


Basic Information

Item Value
RNA id XM_034310748.1
length 4920
RNA type mRNA
GC content 0.51
exon number 17
gene id mecom
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 955480 ~ 1102884 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGTTTGGATtgagaagtagaagaagaagaagaagaagtagaagaagaagaagaagaagaagagggtaaaaaaaaaggacagaagaaAAAGTGAAGAGAGAGTCCGACGCGAGCGACGCCGTGAAGACGTCCAGGCAGCATGAGGTCCAAGAGCAGGGCGAGGAAGCTGACCACCGGTGATGAAGGTGACTTCCCACTTTTCCCCTCTGATGTCCTGGAGGAAGCCGGGAGAGCGTCCGACGGAGACCCCATCCCATTAATCACCTCTAACAGCGTCCACTCATCGAGTGTACTATGCGAAAGAAGCTCCCCAGTGGACTCTTCTTGCTTCACCACCTCCTTCCACACACCCGTGTACCTGGACGATGAGGAGGCAGCGCCATCTTTGCCCCCAGACTTCGAGCTGCGTAAGTCGAGCGTTTCAGCTGGCAGCCTGGGCATCTGGAGCAAGAGGAGCCTGGAGGTCGGGGAGGAGTTCGGACCCTTTGAGGGAAGTCATCGTCGACAGGGCTGTGAGGAGGCTGGACTCGATGGCCGTGTGTCTGATAGCACAAGCTGGCTAAGACACGTCCAGATATCGCCGTCTCCCCACCAGTACAACCTCACAGCTTTTCCAATACATGACCAGATATTCTACCGTGTGGTGCGCAAAGTTTCTCCGGGTGAAGAACTCGTACTGTTCATGAAGGCTGAAGAGTTTTCATGTGAAGCCATGGCTCCAGATATACACGAGGAGCGTCAGTTCCGCTGTGAGGACTGCGAGCAGCTTTTCCCATCAGGCTCAGAGCTGCTGGAGCATCAGAACAACTCGTGTTCCAACCGGCCCTCGTCCGGCTTCACGCTGCCCGAGCAGGCCATCGCGAGTGCCACCGACGAGTGTAAAGAATGCCAGAGAGTGTTTCCGGATAGTCagagtctggaggcacactctctctcccactcgGAAGAGAGGGAGTACAAATGTGACCAGTGCCCGAAGGCCTTCAACTGGAAGTCCAACCTGATTCGCCACCAGATGTCACATGACAGCGGCAAGCACTATGAATGTGAAAACTGCTCCAAGCAGGTGTTTACAGACCCAAGTAACTTGCAGAGGCACATCCGCTCGCAGCACGTTGGTGCACGGGCACACGCCTGCCCCGACTGCGGCAAAACCTTCGCCACGTCGTCCGGCCTCAAGCAGCACAAACACATCCACTCGTCCGTCAAGCCCTTCATGTGCGAGGTATGCCACAAGTCCTACACCCAGTTCTCAAACCTGTGCAGGCACAAGCGCATGCATGCTGACTGTCGGACTCAGATCAAGTGCAAAGACTGTGGCCAGATGTTTAGCACCACTTCTTCCCTCAACAAACACCGCCGCTTCTGCGAAGGCAAAAACCATTTTGCTGCTGCCGCAGGAGGGCTCTTTGGCCCTGGCATGGCTCTTCCTGGCACTCCTGGAATGGACAAGTCCGCTCTAGGACTGGGGCCAGGCTCCGGTGGTTTGGCAGATTATTTTGGTCCAAATCGGCACCATGGCGGACTAACGTTTCCAGCAGCTCCTGCAGCATTCCCCTTCAGTTTTCCAGGACTCTTCCCATCTGGACTGTACCATCGGCCACCCCTCATCCCTGCCACAACTCCCATAAAAAGCCCACCAGCCTTGGATTTCCAGAAGAGTCCACCATTATCCTCGCCTGTGCCTGGGATGCAAGAGTCCCAGGACCTCCTGATGAGCCTCCGAAAGCACTCGATCAATGGGGAAGGAACAGAAAATGGGCCAGAGCACCTAATAGAGGGCTCCGCCACCAAGGCGAGACAAGGCATCAAGACAAGTGACCATTCAGAGAGTAGTGACCTGGATGATGTTAGCACACCAAGTGGAAGTGAGCTAGAGAGTACTTCCGGGTCAGAACTGGACAGCGATGCTGAGAGTGACCGGGATCAAGAAAGGGATCGGGAAAATGGGAAAGGACCAAAGAGGAGATCCAGTAGTCCTACCATGGGGCAAAGCCCCGCCCATGGCAGCTCTAACAATGGCAGTGCTGGCAACATAAACGGAACCGATGTGCCACCGCAAGGACTTTTTTCTCCCACTGCGGATGAGCATACCGCTGTTTCTGGAGCCGTCAATGATTCCATCAAGGCCATTGCATCTATTGCGGAGAAATACTTTGGCTCCACAGGACTTGCAGGGCTGCACAATAAAAAAGGGGACCCATTGGGATACCCTGCCATGTTTCCTCTCCCCTTCTTTCCTGCCTTCTCTCCCCCAGTCTACCCCTTCCATGAGAGGGAGCATCTTCGACCTCGAGGCATCAAAGGAGAGCCAGAGAGTCCATTGCAAGAAAGCAAGAAGCCACAAGGCAGTACTGCTGAATCTCCCTTCGACCTCACTACCAAGCGCAAAGAGGAGTGCCTAGCGCAGACCTTTGCCACCTCAAAGCTGGAGGTGCCTCATATACTCTCGGCCAACCAGGACCAACCACTGGACCTGAGTTTGGGTGGGCGGAGCCGGAGCACACGCCTAAAATCAGGGGAGTCACGGAAGAACCACATAATTGGAGAGGACAGAATTGAGACAGAGCCTCCAAAAGCAGACTCCACTATCCAGCACGCAAGACCCACCCCATTCTTTATGGACCCAATCTACAGCAGGGTTGAGAAGAGAAAAGCGACGGATCCGTTTGAGGCGCTGAAAGAAAAGTATATGCGTCCCACACCAGGCTTCCTCTTCCACCCACAGCTCCGCATGCCTGATCAGAGGACCTGGaTGTCAGCGATAGAAAACATGGCGGAGAAGTTGGAAGCGTTCGGCCCGTTGAAGTCAGACGCCACTGACATCATGCGCTCGGTTCCCTCCATGTTTGATTTCCGAGCTCCAGCTACGACGCTGCCCGAAACACTGCTGCGTAAGGGGAAGGAACGCTACACCTGCAGATACTGCGGCAAAATATTCCCACGCTCAGCTAACCTCACAcggcatctcagaacacacacaggggaGCAGCCGTAcagGTGTAAGTATTGCGATCGTTCGTTCAGTATCTCGTCAAATCTGCAGCGCCACATCAGGAACATCCACAACAAAGAGAAACCGTTCAAATGCCACTTGTGTGACCGCTGCTTTGGCCAACAGACCAACCTGGACCGGCACCTCAAAAAACACGAGAACGGTAATCTGTcaggcacgGCAATGTCGTCGCCGCAGTCGGAGCTGGACAGCAGCAGCGCCATTCTGGATGATAAAGAGGACTCGTACTTCAACGAAATTCGCAACTTCATCAGCAGCAGCGGCCAGAGCGCTGGCTCACCTCCACACTCCGATGAAGGTTTAAACAGCGGCCATTTCGAGGATGACAAAGCCGTCACTGATCCAAGGTCACATGACCTGGATGAGGAGGAAGGGGAGGAGCCAGgagtggaggaagaggaagcagaGCTTTGTGACGCCAACAAACCTGCCAACAAAGTGGCGTCTAGCAACCTAGGCGACGACATCGCCAATGACATCAACGATGACATCAATGACGAGCTGGACTACGACGGCGCACCCGATGGACTGCTGGACTGCAAATCTTCaccacagagGTTTGACGAGGATGACGAGGATGAAGAGCACGGTGGATTCCCTGCGCTGGATCACATCCGCCACTTCACCGCAGAAGAGGCGGAGCTCAGTGACAGTGATGTCACAGGATTTGACTCCGCCCACCTGCCCGAGGCTGTGAAGCAGCCACTGTACAGGAAGTCCAAGTCACAGgCTTATGCAATGATGTTATCTCTGGCAGATAAAGACCCCCTGCCCCCTTCCTCTCACGCTGCCTCGGTGTGGCACACACTCGGACGCGCAGCCGAGTCCAACGCCATCCAGTCCCTCAGTCACGTATGATGTCCTTCACATCTGACCTCTGTGACCTCTAACTCCAACCACAGGCACTCAGACCAGACTCGGCCTGGATCATGCACAGCCCATACACTGCTGAGTAGAGAGCTTTGTTCTTCTGAAAACACTAATGTCAGGGTCCAtggagtgtatacacacacagagacacacacacacacacacacacacacggtatcCAATAACACTAGTCATTTCCTAATCTGACATTACACATTAGATTGATTTTATTCcaatgaatgattttttaatgATGGTGATTTACAATATAAGACAAATGTctcgatgatgatgatgatgatgatgatgatgaaagtcatgcagatagtagtaataaaaattgtatttattctgTCCAGTTTCTATGTTTTGCACAGCAACGGCAGCTCATAAACAGGGGAAAGCTTCATTAAAGTGTAACACTATGATATTACgatatattgcaatattttcCTTTCCGTTGAGTCGCTTAAGGGGCCCTTGAGAGTCTtccatattaaaaaagaaagaagaaaaacatttcacacagacacacacacacacacacacacacactcacagatcgTCAGTCCATGTTTTGTGTGCGTGATTGTCATTTAACATTGGTCGTATTCGATacgtttttattattattattattttttattattagatttgttTAATGTAACACACATCAGCATCCAAATCGTATTATAAAGcttgtctcgctctctctctctctcacacacacacacacacacacacacacacacacacacagttactgaTGACATTCCCTTTAAACCAGAATAATCTACAACAACCTTTTTAAAAGGGCAGGATACAACAACGACTGGCGTGTAAATtaattgtaatatatatatatatatattaaaaaattggAATCATAACAGGTCACATGGAGGCACTcgtagaaaatgaaataaataaaaatacaaaaaaaaagcgtaAAGAGGACGGTGGGTGTGGGGACTGTTCTCCGATTCTGTCAATAAAAGCACTGCATCTTTAACCTGGTCTCCGCCCTTCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258434 lncRNA downstream 92035 791773 ~ 863445 (-) True G218191
TU258460 lncRNA downstream 107840 847396 ~ 847640 (-) True G218208
TU258428 lncRNA downstream 215482 734370 ~ 739998 (-) True G218188
TU258426 lncRNA downstream 217262 733617 ~ 738218 (-) True G218187
TU258423 lncRNA downstream 218587 731516 ~ 736893 (-) True G218185
XR_004579531.1 lncRNA upstream 20547 1123429 ~ 1127973 (-) True LOC117599090
TU258584 lncRNA upstream 57831 1160713 ~ 1161109 (-) True G218306
TU258603 lncRNA upstream 115349 1218231 ~ 1227815 (-) True G218324
TU258604 lncRNA upstream 118271 1221153 ~ 1222614 (-) True G218325
TU258627 lncRNA upstream 225256 1328138 ~ 1357336 (-) True G218347
XM_034310906.1 mRNA downstream 78535 863690 ~ 876945 (-) False mffa
XM_034310905.1 mRNA downstream 78535 863690 ~ 876945 (-) False mffa
XM_034310904.1 mRNA downstream 78535 863690 ~ 876945 (-) False mffa
XM_034310903.1 mRNA downstream 78535 863690 ~ 876945 (-) True mffa
XM_026943423.2 mRNA downstream 93885 857338 ~ 861595 (-) True mrpl44
XM_034310853.1 mRNA upstream 14472 1117354 ~ 1119675 (-) True LOC113533231
XM_034310854.1 mRNA upstream 16910 1119792 ~ 1121387 (-) True LOC117599093
XM_034310855.1 mRNA upstream 18200 1121082 ~ 1122737 (-) True LOC117599094
XM_026943414.2 mRNA upstream 95231 1198113 ~ 1217196 (-) True irs1
XM_034310856.1 mRNA upstream 132025 1234907 ~ 1290435 (-) True col4a4
TU258469 other downstream 76297 878772 ~ 879183 (-) True G218214
TU258381 other downstream 271125 654112 ~ 684355 (-) False dpf1
trnae-cuc_27 other downstream 723669 231740 ~ 231811 (-) True trnae-cuc_27
TU258580 other upstream 51528 1154410 ~ 1154700 (-) True G218302
trnag-ucc_16 other upstream 392880 1495762 ~ 1495833 (-) True trnag-ucc_16
trnag-ucc_17 other upstream 394154 1497036 ~ 1497106 (-) False trnag-ucc_17
trnag-ucc_18 other upstream 394458 1497340 ~ 1497411 (-) True trnag-ucc_18
trnag-ucc_22 other upstream 866530 1969412 ~ 1969483 (-) True trnag-ucc_22

Expression Profile