RNA id: TU258603


Basic Information

Item Value
RNA id TU258603
length 615
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G218324
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 1218231 ~ 1227815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAAGAGGGGCttgacaggaaacaggaagaggTAGACATTAAGGCCGAGCGTCACTAGTGTAGCAGGAGGGATGTTGTCCGTGCCGATCTGGAACACCTGAGACGCCAGCAAGAGCAGGCCAAGATTAAATCCTCGCTGTCTGGTACgcatctgaaacacacacacacacacacacacacacacacacacacaaatgtactcTGCattattacaccacagcgcattctgattggtcagaaggcgctGATTCATCTTCTAGCAGCGTGTATGGCTGTGACGTTTTCTCTAAGatatttatttggcatttttggaaggagtctccagtgtcagtaactTTCCGcgtcatgggaaagtcttcaggacagacgagtttctggtttctctgtagcatgacaatctgtgggtttttttttattgttattattaactgcaagagagagatagagaaaaaaatcgAGGCTGGAGAAAGCACGATTGCTCTGATGTAGTATATCTGTTacaatgcaagtgataacaggaactagcttgctTTTCAGACATTCCACGACAtaaaaagtaactataaattgataaaaaagtatgtgtcTcactcacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258584 lncRNA downstream 57122 1160713 ~ 1161109 (-) True G218306
XR_004579531.1 lncRNA downstream 90258 1123429 ~ 1127973 (-) True LOC117599090
TU258540 lncRNA downstream 125052 1092791 ~ 1093179 (-) True G218268
TU258486 lncRNA downstream 208729 955511 ~ 1009502 (-) False mecom
TU258434 lncRNA downstream 354786 791773 ~ 863445 (-) True G218191
TU258627 lncRNA upstream 100323 1328138 ~ 1357336 (-) True G218347
TU258664 lncRNA upstream 264585 1492400 ~ 1493405 (-) True G218377
TU258667 lncRNA upstream 269064 1496879 ~ 1497098 (-) True trnag-ucc_17
TU259081 lncRNA upstream 318630 1546445 ~ 1568191 (-) False LOC113544681
TU259076 lncRNA upstream 339705 1567520 ~ 1568191 (-) True LOC113544681
XM_026943414.2 mRNA downstream 1035 1198113 ~ 1217196 (-) True irs1
XM_034310855.1 mRNA downstream 95494 1121082 ~ 1122737 (-) True LOC117599094
XM_034310854.1 mRNA downstream 96844 1119792 ~ 1121387 (-) True LOC117599093
XM_034310853.1 mRNA downstream 98556 1117354 ~ 1119675 (-) True LOC113533231
XM_034310748.1 mRNA downstream 115349 955480 ~ 1102882 (-) False mecom
XM_034310856.1 mRNA upstream 7092 1234907 ~ 1290435 (-) True col4a4
XM_026943589.2 mRNA upstream 165462 1393277 ~ 1447217 (-) False slc8a2b
XM_026943588.2 mRNA upstream 165462 1393277 ~ 1447217 (-) True slc8a2b
XM_034310354.1 mRNA upstream 242005 1469820 ~ 1474274 (-) True gmnc
XM_034310351.1 mRNA upstream 277674 1505489 ~ 1514055 (-) True zgc:162872
TU258580 other downstream 63531 1154410 ~ 1154700 (-) True G218302
TU258537 other downstream 84213 1080288 ~ 1134018 (-) True G218265
TU258469 other downstream 339048 878772 ~ 879183 (-) True G218214
TU258381 other downstream 533876 654112 ~ 684355 (-) False dpf1
trnae-cuc_27 other downstream 986420 231740 ~ 231811 (-) True trnae-cuc_27
trnag-ucc_16 other upstream 267947 1495762 ~ 1495833 (-) True trnag-ucc_16
trnag-ucc_17 other upstream 269221 1497036 ~ 1497106 (-) False trnag-ucc_17
trnag-ucc_18 other upstream 269525 1497340 ~ 1497411 (-) True trnag-ucc_18
trnag-ucc_22 other upstream 741597 1969412 ~ 1969483 (-) True trnag-ucc_22
TU260071 other upstream 1388411 2616226 ~ 2629866 (-) False gal3st2

Expression Profile