Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU258604 |
| length | 205 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 3 |
| gene id | G218325 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 1221153 ~ 1222614 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU258584 | lncRNA | downstream | 60044 | 1160713 ~ 1161109 (-) | True | G218306 |
| XR_004579531.1 | lncRNA | downstream | 93180 | 1123429 ~ 1127973 (-) | True | LOC117599090 |
| TU258540 | lncRNA | downstream | 127974 | 1092791 ~ 1093179 (-) | True | G218268 |
| TU258486 | lncRNA | downstream | 211651 | 955511 ~ 1009502 (-) | False | mecom |
| TU258460 | lncRNA | downstream | 373513 | 847396 ~ 847640 (-) | True | G218208 |
| TU258627 | lncRNA | upstream | 105524 | 1328138 ~ 1357336 (-) | True | G218347 |
| TU258664 | lncRNA | upstream | 269786 | 1492400 ~ 1493405 (-) | True | G218377 |
| TU258667 | lncRNA | upstream | 274265 | 1496879 ~ 1497098 (-) | True | trnag-ucc_17 |
| TU259081 | lncRNA | upstream | 323831 | 1546445 ~ 1568191 (-) | False | LOC113544681 |
| TU259076 | lncRNA | upstream | 344906 | 1567520 ~ 1568191 (-) | True | LOC113544681 |
| XM_026943414.2 | mRNA | downstream | 3957 | 1198113 ~ 1217196 (-) | True | irs1 |
| XM_034310855.1 | mRNA | downstream | 98416 | 1121082 ~ 1122737 (-) | True | LOC117599094 |
| XM_034310854.1 | mRNA | downstream | 99766 | 1119792 ~ 1121387 (-) | True | LOC117599093 |
| XM_034310853.1 | mRNA | downstream | 101478 | 1117354 ~ 1119675 (-) | True | LOC113533231 |
| XM_034310752.1 | mRNA | downstream | 236836 | 955480 ~ 984317 (-) | False | mecom |
| XM_034310856.1 | mRNA | upstream | 12293 | 1234907 ~ 1290435 (-) | True | col4a4 |
| XM_026943589.2 | mRNA | upstream | 170663 | 1393277 ~ 1447217 (-) | False | slc8a2b |
| XM_026943588.2 | mRNA | upstream | 170663 | 1393277 ~ 1447217 (-) | True | slc8a2b |
| XM_034310354.1 | mRNA | upstream | 247206 | 1469820 ~ 1474274 (-) | True | gmnc |
| XM_034310351.1 | mRNA | upstream | 282875 | 1505489 ~ 1514055 (-) | True | zgc:162872 |
| TU258580 | other | downstream | 66453 | 1154410 ~ 1154700 (-) | True | G218302 |
| TU258537 | other | downstream | 87135 | 1080288 ~ 1134018 (-) | True | G218265 |
| TU258469 | other | downstream | 341970 | 878772 ~ 879183 (-) | True | G218214 |
| TU258381 | other | downstream | 536798 | 654112 ~ 684355 (-) | False | dpf1 |
| trnae-cuc_27 | other | downstream | 989342 | 231740 ~ 231811 (-) | True | trnae-cuc_27 |
| trnag-ucc_16 | other | upstream | 273148 | 1495762 ~ 1495833 (-) | True | trnag-ucc_16 |
| trnag-ucc_17 | other | upstream | 274422 | 1497036 ~ 1497106 (-) | False | trnag-ucc_17 |
| trnag-ucc_18 | other | upstream | 274726 | 1497340 ~ 1497411 (-) | True | trnag-ucc_18 |
| trnag-ucc_22 | other | upstream | 746798 | 1969412 ~ 1969483 (-) | True | trnag-ucc_22 |
| TU260071 | other | upstream | 1393612 | 2616226 ~ 2629866 (-) | False | gal3st2 |
