Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU258667 |
| length | 220 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 1 |
| gene id | trnag-ucc_17 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047608.1 |
| NCBI id | CM018554.1 |
| chromosome length | 25848897 |
| location | 1496879 ~ 1497106 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU258664 | lncRNA | downstream | 3474 | 1492400 ~ 1493405 (-) | True | G218377 |
| TU258627 | lncRNA | downstream | 139543 | 1328138 ~ 1357336 (-) | True | G218347 |
| TU258603 | lncRNA | downstream | 269064 | 1218231 ~ 1227815 (-) | True | G218324 |
| TU258604 | lncRNA | downstream | 274265 | 1221153 ~ 1222614 (-) | True | G218325 |
| TU258584 | lncRNA | downstream | 335770 | 1160713 ~ 1161109 (-) | True | G218306 |
| TU259081 | lncRNA | upstream | 49347 | 1546445 ~ 1568191 (-) | False | LOC113544681 |
| TU259076 | lncRNA | upstream | 70422 | 1567520 ~ 1568191 (-) | True | LOC113544681 |
| TU259077 | lncRNA | upstream | 70422 | 1567520 ~ 1568191 (-) | False | LOC113544681 |
| TU259078 | lncRNA | upstream | 70422 | 1567520 ~ 1568191 (-) | False | LOC113544681 |
| XR_003404538.2 | lncRNA | upstream | 70706 | 1567804 ~ 1568150 (-) | False | LOC113544681 |
| XM_034310354.1 | mRNA | downstream | 22605 | 1469820 ~ 1474274 (-) | True | gmnc |
| XM_026943589.2 | mRNA | downstream | 49662 | 1393277 ~ 1447217 (-) | False | slc8a2b |
| XM_026943588.2 | mRNA | downstream | 49662 | 1393277 ~ 1447217 (-) | True | slc8a2b |
| XM_034310856.1 | mRNA | downstream | 206444 | 1234907 ~ 1290435 (-) | True | col4a4 |
| XM_026943414.2 | mRNA | downstream | 279683 | 1198113 ~ 1217196 (-) | True | irs1 |
| XM_034310351.1 | mRNA | upstream | 8391 | 1505489 ~ 1514055 (-) | True | zgc:162872 |
| XM_026943596.2 | mRNA | upstream | 17875 | 1514973 ~ 1519815 (-) | False | ilkap |
| XM_026943595.2 | mRNA | upstream | 17875 | 1514973 ~ 1519812 (-) | True | ilkap |
| XM_026943597.2 | mRNA | upstream | 17875 | 1514973 ~ 1519422 (-) | False | ilkap |
| XM_034310348.1 | mRNA | upstream | 24229 | 1521327 ~ 1540722 (-) | False | LOC113544537 |
| trnag-ucc_16 | other | downstream | 1046 | 1495762 ~ 1495833 (-) | True | trnag-ucc_16 |
| TU258580 | other | downstream | 342179 | 1154410 ~ 1154700 (-) | True | G218302 |
| TU258537 | other | downstream | 362861 | 1080288 ~ 1134018 (-) | True | G218265 |
| TU258469 | other | downstream | 617696 | 878772 ~ 879183 (-) | True | G218214 |
| TU258381 | other | downstream | 812524 | 654112 ~ 684355 (-) | False | dpf1 |
| trnag-ucc_18 | other | upstream | 242 | 1497340 ~ 1497411 (-) | True | trnag-ucc_18 |
| trnag-ucc_22 | other | upstream | 472314 | 1969412 ~ 1969483 (-) | True | trnag-ucc_22 |
| TU260071 | other | upstream | 1119128 | 2616226 ~ 2629866 (-) | False | gal3st2 |
| trnag-ucc_24 | other | upstream | 1181996 | 2679094 ~ 2679165 (-) | True | trnag-ucc_24 |
| trnaw-cca_13 | other | upstream | 1186308 | 2683406 ~ 2683477 (-) | True | trnaw-cca_13 |
