RNA id: TU260175


Basic Information

Item Value
RNA id TU260175
length 3818
RNA type TUCP
GC content 0.43
exon number 2
gene id G219651
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 2907326 ~ 2911165 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTTGAGCTGTTTGATCTCTAGCTGGGCTTTAAAAGCCTGGATCGTCGCCGCTCCATCGGAGAAGCGCCGCACAGGAGAAAAGCGCTCCATTGGTaagtgcagtgtgttacagtcttTATAGGACGACCTTcgagacacacacattcattaacagTTGTACAACTGGGAAATGTGGTAAATTCACATCTTACAAATCTGTGTTACTTCTGACACATTGATTAGTTATCCTAAACTACATATATATCAGTTACCCTATGCCATATTGACTGATTAGTTCAGCAATTAAATTGGCTGGGGCAAACCAACAAATAAGCAACCTTGAGGTGCCCGAAAATGACTAGTTATCCTACACCAACTCTAACGGTTAGCTATCATAGACTACACTGATTAATAATTTACCATGGAATAAACAGGTCTTACCTTCTCTCGCCATaacatttgcttctttagaTCATAAATCAAACAGATTCATATTTTACCCTAGACTGAACTGATGAATTAGTTACCTTATACTGAATTATGATCAGCAACCTTAGAACAAACTGATCAATTAGCTACCTTAGAAACCAACCCATTGATTAGTTACCTTACAACAAACTGATCGATTAACTACATTAGAACAATCTAATTCATAGGTTACTCTATCTAATTAATTACACTTGGCAAAACTAATCAGTTACTGGAGATCAAACCAATCAAAATAGTTGCCCTACTACACCAAGTCTAACATTCATAACATTAGCTAGACAAAGCCCATAGATTAGGTGCCCTGTACAAATCTTAATGACTAGTTATTCTACACCAAAACGATAAATAAGTTACTCTAGACCAAACTGATAATGCCGTTCTAAACCTATTAATTACCCTACCAAATCTAATGATCTAATCTAAATTTGTTATACTGGACCAAATCAAACATTTCATTAACCTAATCAATGCTGATTAGTTTCTTACCTTCAATCAAGGGCATTATTTATTCTAGACCGGGGTTCATCAAAGCACAGTGCGTGTTGGGTCCTACAAATGTCCACTCCCAATTTCCTAGGAGTCAGTAATGATGAGGTGGCCAAGCAGTACGTGTCTGATTATTCCACGGTAAACTGAACAAATAGTCGCCCAGTATAAATTAACTGACTACTTACTGTAGCCTCAAGTGATTAAATAGTTATCCTAAGCAATTAATTAGTCACCCAAGACTGAAGAGAGTCACACGAGACCATACCATTTGACATTTCATTTCTAGGGGACTTATAAATCCCTTCACAAGTATGACATGTGCTGTGAGTAgtgctaaaaataataattaaaataattaacaaatctAGTTAATTTAGTTATGTTAGACAAATTCTAGAGGAGCTTAACTTCTGCCCTAGAGAGATAAAAGTCCAGCCATTAATGGGAAAACCTCTACTACCTGTCCACggtaatatatttaaaatgcataGGTATTTCAATATTTTGTCTTGATTAATTACCCTAAACGGGTCAATTAGTTACCCTAAACTGGGTGATTAGTTATTAAGAACTGCTCAATTAGTTACCCAGATGACTTGATTAGTTGCCCTGAACAGTGTGATTAGTTGCCCTTAACTGCTTGATTAGTTAACAAGACAACTTGATTAGTTACAATGAACAGTGTGATTAGTTGCCCTGAACTGCTTGATTAGGTACCATTAACTGGGTGATTAGTTACCCTAAATTAAACTGCTTAACTAGTGACAATTAACTTAATCCTAGAGTGCTCGATCAGTTACCCTACACTGCTCGATCGGTTATCCTAAAGTGCTCGATTAATTACCCTAGACTGACTGATCAGTTACCCCACACTGCTCGATCAGTTACTTTACACTGCTCAATTAATTACCCTACACTGCTCGATCAGTTACCCTTCAGTGCTCGATCGGCTACCCTACACTGCTCAACCACAGACTGCTCGATCAATTACCCTACACTGCTGGATCAGTTACCCTACACTGCTGGATCAATTACCCTACACTGCTGGATCAGTTACCCCAGATGGCTCGAACAGTTACCCCAGATGGCTCGAACAGTTACCCCAGATGGCTCGAACAGTTACCTTACACTGCTCGATCAGGTACCCTACACTGCTCGATCAGGTACCCTACACTGCTCGATCAATTACCCTACACTGCTCGATCAGTTACCCTACACTGCTCGATCAATTACCCTACACTGCTCGATCAATTACCCTACACTGCTCGATCAATTACCCTACACTGCTCGATCAATTACCCTACACTGCTCGATCAATTACCCTACACTGCTCGATCAATTACCCTACACGGCTCGATCAATTACCCTACATGGCTCGATCAGGTACCCTAAACTGCTCGATCAATTACCCTACGCTGCTCGATCAGGTACCCTAAACTGCTCGATCAATTACCCTACGCTGCGCGATGTTACCCTACGCTGCCCGATCAGTTAATCTACACTGCTCGATCAGTTACCCTACGCTTCTCAATCAGTTACCCTACACTGCTTGATCAGTTACCCTACACTGCTCGATCAGTTACCCTAAACCGCTCGATCAGTTACCCTACGCTGCTCGATCAGTTACCCTACGCTGCCCGATCAGTTAATCTACACTGCTCGATCAGTTACCCTACGCTTATCAATCAGTTACCCTACACTGCTTGATCACTTACCCCAGACTGCTCGATCAGTTACCCTACACTGCTCAAACAGTTACCCCAGACTGCTCGATCAGTTACCCCATGCTGATTGATCAGTTACCCCAGACTGCTTGATTAATTTAGCTTAAGTAGTGACCCTGAAGTACTCGTTTCTTACACCAGCCTGGTCGATTAGTTACCTTTGACTAAATCCACTCATTTGTTGATTAAGAGATCAGTGTTTCAGActtgttaattatttgattaGCCAAGACAGATTTGTAATCCTAGACTATCCAGCGATAATAAATCACTCATCGGGGGATACACTGTACTACTCACACAGTGATAAGTCATAATGAGGTCATGGAGTCATAACAATAACGTCATGCAGGTCATGCAGCACTCGGGTCGTCCATGTCCAGtctgagccacacacacacacagagtcacacagctgtcagtgtgtctgtgtgtgagactggaGCTGGAGTTCACACCAGAGGTCAGGCAAAGGTCAAACCAAAAGACATGCATCTCACTCATGCTCTCAGTCCAAAGccctaacacactcacactgtgaGTCTGTGTCGCTTCAatgctggtgtgtttgtgtctgtctgtgtgtgcatgtatgagagagagagagtgtgtgttctctcaCCGTGAGTGCTCGGGGGTCCAGCCCCTTGTGCGTGCTCTCTGAATGTCGTTTGAGAGCTCAGTGGAGGTGTAGCTCGAGCTCGCTGCGTTGTGCGTTGTGTGTCGTTTGGAGCTGTTCGCCAAGTACCTGCGCCGTGGGAGTGAAGGGGAGGTGGCGGGGCAAAGACAGGAAGCAGCACAAATcagctctctgattggctgcctctTTGACAGGTCCGATTGGAAGACAGGATGTGTcctttgcattttgttttggatgcttactgttattaatattatgcaAAGCTTAGTCAGAAGCGAAGccggttctttttttttaatttggttttaGCAACAGAGATTTTAGGAgaatttagaattttgaaattagATTTGATAACAAGCCAGAACTCAATGGAATtatgggagagaaagagagagaaagaaagagggggagGAGGGATAGCGAAGGGAATGGCGCCCCCAGTGGCAGAAAGCAGTGCTGCAGCCTTTAGTACGCACCCTGCACCCGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260101 lncRNA downstream 68084 2832712 ~ 2839242 (-) True LOC113544648
XR_003404527.2 lncRNA downstream 68415 2832700 ~ 2838911 (-) False LOC113544648
TU260102 lncRNA downstream 68682 2832712 ~ 2838644 (-) False LOC113544648
TU260111 lncRNA downstream 108375 2798193 ~ 2798951 (-) True G219609
TU260112 lncRNA downstream 108375 2798310 ~ 2798951 (-) False G219609
TU260154 lncRNA upstream 1515 2912680 ~ 2936069 (-) True G219632
TU260205 lncRNA upstream 58928 2970093 ~ 2991659 (-) True G219678
TU260229 lncRNA upstream 104751 3015916 ~ 3031001 (-) True G219697
XR_004579533.1 lncRNA upstream 437198 3348363 ~ 3520487 (-) True LOC117599091
TU260371 lncRNA upstream 677047 3588212 ~ 3588516 (-) True G219836
XM_034310496.1 mRNA downstream 26033 2863388 ~ 2881293 (-) False sidt2
XM_034310495.1 mRNA downstream 26033 2863388 ~ 2881293 (-) True sidt2
XM_034310493.1 mRNA downstream 31250 2863388 ~ 2876076 (-) False sidt2
XM_034310494.1 mRNA downstream 31256 2863388 ~ 2876070 (-) False sidt2
XM_034310700.1 mRNA downstream 75313 2824607 ~ 2832013 (-) True paf1
XM_026943290.2 mRNA upstream 35588 2946753 ~ 2953984 (-) True LOC113544469
XM_034310837.1 mRNA upstream 121862 3033027 ~ 3690495 (-) False lsamp
XM_034310838.1 mRNA upstream 121862 3033027 ~ 3664728 (-) False lsamp
XM_026943528.2 mRNA upstream 121862 3033027 ~ 3238346 (-) True lsamp
XM_026943329.2 mRNA upstream 816427 3727592 ~ 3807098 (-) True igsf11
trnaw-cca_13 other downstream 223849 2683406 ~ 2683477 (-) True trnaw-cca_13
trnag-ucc_24 other downstream 228161 2679094 ~ 2679165 (-) True trnag-ucc_24
TU260071 other downstream 277460 2616226 ~ 2629866 (-) False gal3st2
trnag-ucc_22 other downstream 937843 1969412 ~ 1969483 (-) True trnag-ucc_22
trnag-ucc_18 other downstream 1409915 1497340 ~ 1497411 (-) True trnag-ucc_18
TU260468 other upstream 829117 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other upstream 900395 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other upstream 900395 3811560 ~ 3816787 (-) False LOC113544484
TU261666 other upstream 2798933 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 2886820 5797985 ~ 5803878 (-) False LOC113532612

Expression Profile