RNA id: TU260229


Basic Information

Item Value
RNA id TU260229
length 1776
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G219697
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 3015916 ~ 3031001 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttgaaaacagacattgaaacttttttaaattttatttattttttttttccacaattgaACTCCTTTTAGATTCAAACTGGACATTGCACTCTCACGTGaacataggaaaaaaaaaggctgatttatttttttttttaattattttgttcgATTTTTCTCTTTCGTTTTCAACATCAGCTCAGGAATAATTCCAGTCGATATCATCAAACCGCCATTAACAACACCGAGGACATCGAGAAAGAAGCCACAACGTTTTGGTTACTCGTGACTGcgaggaggtttttttttttcccctctcaggAGGAAAATTTCCATGCAAATGAGTCGAATGGGTTCAAGCTATCCATGAAACGCTGGCCAAAACAATGCATCAGCAGAAAACACTGAAAGGGAATCATATAATACTTCTCCCTAATAAATAGCAGTGCACTATTACTACGGTAAATGGAAAaaggtaaatatatatatgtgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggaatagCTAGAAATGCAAACCAGGGTCGAACGGGTTTGAGTCGAGTATGAAATTGCGTCTCCTGTCCCTTTTTGGTGACGTTGATGAACGTACAATGTTGTTTTCTCGCACGTTGACGAAGCAGTCACGTTCTTGCACGTTCACTGCTAGCTTGAGCCGCAAAGTTGCGTATGGAACCTCCCCAAGATGTAAGAAAATCATTTTGCCACACGAAAGAAAATATATAGGaccaaacaaattaaaactgaCTGTCTCCACAATCAGAGGGCAAAGAGCAACCGTTTAATTATCTGGTATCGTGTTACAACGGCGGTTCTCTTTAAGCGCTCTCGGCCTTGTCATCCTCCTTCGCCGCCTCTGAAACGCCGCCCTCTGCCTGCTCGGAGTCTTCTGCAGCATGGTTTGTCTTGCGTTTGGTTCACTTCGGCTTCACAATCAGCTGTCTCACTAGCAGTGGCAGGCACGTCGGCTTGTTTGGCTTCCgcctttttctcctcctccttttcttcctccttcttctccgCATCTACATTCTCAGCCTCGACTTCGGCATTTTCTGCTTCTTTAGGCTTCTCTGCTTCCTTTGGTTCCTCCTTCACATCCTGTTTAGGTTCTGAAGGGGAGGTGGCAGGAGCTTCAGCCTTGCTGTCCTCTGCTGCTGGAGAGTTAGTGGGACTTTTGGCCTTTTCCTCCTCCTTGGCAGCTTCGTCTTGTTTCTCCGCGGTGGGAGAAGCagctttctcctcctctttcttctctccctcATTTTCCTCAGCCTTGGCCTCAGCAGCAGGACTGTCCTCCTCCTTGTCATcatccttcatttttttccgGATTATGTGTCCGCGGAAGCTTGCCTGGATCTTGGTGGCAGCCTTGTGGGCTTTGTCTTCTGGTTTGGTGCCATCTTGCTTGATCTCCTGGTCAGCCTCTTCGGTCTTCTCCACGGCTTTGTTCTTCTTATACAGCACAGCATGCTTGTAGTATCCTTCCTTTATTTGCCGCCTTCTTCCCTTCTTCCCTTTTTTGCACTTCTCTCACACTCCCTCGCTCGCTCACGcgctctctcttgctctcgctctctctctcactgtctctctttctctctctctctctctctctcttgcgtgcacacacacacacacacacacacacacacactctcgggCTGTATCAACAGCTGAGGCGTCTGATGCTTTTAGTCATTACAGTCAGGcccaagcgcacacacacactacggcTGGTCGCTCGCTCTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260205 lncRNA downstream 24257 2970093 ~ 2991659 (-) True G219678
TU260154 lncRNA downstream 79847 2912680 ~ 2936069 (-) True G219632
TU260101 lncRNA downstream 176674 2832712 ~ 2839242 (-) True LOC113544648
XR_003404527.2 lncRNA downstream 177005 2832700 ~ 2838911 (-) False LOC113544648
TU260102 lncRNA downstream 177272 2832712 ~ 2838644 (-) False LOC113544648
XR_004579533.1 lncRNA upstream 317362 3348363 ~ 3520487 (-) True LOC117599091
TU260371 lncRNA upstream 557211 3588212 ~ 3588516 (-) True G219836
TU260463 lncRNA upstream 696376 3727377 ~ 3807114 (-) False igsf11
XR_004579541.1 lncRNA upstream 790224 3821225 ~ 3825741 (-) True LOC113544520
TU260851 lncRNA upstream 1250003 4281004 ~ 4282460 (-) True G220278
XM_026943290.2 mRNA downstream 61932 2946753 ~ 2953984 (-) True LOC113544469
XM_034310496.1 mRNA downstream 134623 2863388 ~ 2881293 (-) False sidt2
XM_034310837.1 mRNA upstream 2026 3033027 ~ 3690495 (-) False lsamp
XM_034310838.1 mRNA upstream 2026 3033027 ~ 3664728 (-) False lsamp
XM_026943528.2 mRNA upstream 2026 3033027 ~ 3238346 (-) True lsamp
XM_026943329.2 mRNA upstream 696591 3727592 ~ 3807098 (-) True igsf11
XM_026943316.2 mRNA upstream 780523 3811524 ~ 3816835 (-) True LOC113544484
TU260166 other downstream 52566 2887907 ~ 2963350 (-) True G219642
TU260175 other downstream 104751 2907326 ~ 2911165 (-) True G219651
TU260177 other downstream 104751 2907326 ~ 2911165 (-) False G219651
trnaw-cca_13 other downstream 332439 2683406 ~ 2683477 (-) True trnaw-cca_13
trnag-ucc_24 other downstream 336751 2679094 ~ 2679165 (-) True trnag-ucc_24
TU260468 other upstream 709281 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other upstream 780559 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other upstream 780559 3811560 ~ 3816787 (-) False LOC113544484
TU261666 other upstream 2679097 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 2766984 5797985 ~ 5803878 (-) False LOC113532612

Expression Profile