RNA id: TU260466


Basic Information

Item Value
RNA id TU260466
length 478
RNA type TUCP
GC content 0.43
exon number 4
gene id LOC113544484
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 3740282 ~ 3816835 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGGTCTCTGTTTATTTCCGcatgtccatgtccatgttCGGATCTTCTCTTTACTTCTGCACTTCACTTTACCGAGGAAGCGTCTCTGAGCTCACGGGGGAACCATGGACTTCGATTTGGCTGcagCTGTGAATAAGGACGAAGTGAAGAAGAGTGACGCAAATAAAGTCGAGGGAATCTTTGGATTTGGAAAGAAGGATAAAGACAAGGACAAGGAAAAATGTAAAGACAAGGACAAAAGCAAAGAGCATAAAAAACACAAGGAGCACAAGAAGCCTAAAGAGCATAAgaagcctaaagagcacaagaagcctaaagagcacaaggGGCATGGAGGACACagctcctcatcctcatcctccagcGATGATGATTAGgaaCACCgctggactgaagaaggaatttctttctttccttctttcttttctcccagTAAAATAATTCATGATTTAAAGCTGTTTCTAATTATAATGATgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260463 lncRNA downstream 4446 3727377 ~ 3807114 (-) False igsf11
TU260371 lncRNA downstream 223044 3588212 ~ 3588516 (-) True G219836
XR_004579533.1 lncRNA downstream 291073 3348363 ~ 3520487 (-) True LOC117599091
TU260229 lncRNA downstream 780559 3015916 ~ 3031001 (-) True G219697
TU260205 lncRNA downstream 819901 2970093 ~ 2991659 (-) True G219678
XR_004579541.1 lncRNA upstream 4438 3821225 ~ 3825741 (-) True LOC113544520
TU260851 lncRNA upstream 464217 4281004 ~ 4282460 (-) True G220278
TU260852 lncRNA upstream 464217 4281004 ~ 4325145 (-) False G220278
TU260867 lncRNA upstream 487572 4304359 ~ 4305446 (-) True G220290
TU260836 lncRNA upstream 498079 4314866 ~ 4317621 (-) True G220266
XM_026943329.2 mRNA downstream 4462 3727592 ~ 3807098 (-) True igsf11
XM_034310837.1 mRNA downstream 121065 3033027 ~ 3690495 (-) False lsamp
XM_034310838.1 mRNA downstream 146832 3033027 ~ 3664728 (-) False lsamp
XM_026943528.2 mRNA downstream 573214 3033027 ~ 3238346 (-) True lsamp
XM_026943290.2 mRNA downstream 857576 2946753 ~ 2953984 (-) True LOC113544469
XM_026943291.2 mRNA upstream 104001 3920788 ~ 4072868 (-) True lrfn1
XM_026943293.2 mRNA upstream 104001 3920788 ~ 4072342 (-) False lrfn1
XM_026943294.2 mRNA upstream 104001 3920788 ~ 4072342 (-) False lrfn1
XM_034310385.1 mRNA upstream 104001 3920788 ~ 4072342 (-) False lrfn1
XM_034310386.1 mRNA upstream 104001 3920788 ~ 4009224 (-) False lrfn1
TU260166 other downstream 848210 2887907 ~ 2963350 (-) True G219642
TU260175 other downstream 900395 2907326 ~ 2911165 (-) True G219651
TU260177 other downstream 900395 2907326 ~ 2911165 (-) False G219651
trnaw-cca_13 other downstream 1128083 2683406 ~ 2683477 (-) True trnaw-cca_13
trnag-ucc_24 other downstream 1132395 2679094 ~ 2679165 (-) True trnag-ucc_24
TU261666 other upstream 1893311 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 1981198 5797985 ~ 5803878 (-) False LOC113532612
TU261846 other upstream 2204433 6021220 ~ 6024311 (-) False dynll2a
trnap-cgg_8 other upstream 3378736 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 3575628 7392415 ~ 7463499 (-) True zgc:77784

Expression Profile