RNA id: TU260867


Basic Information

Item Value
RNA id TU260867
length 895
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G220290
representative True

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 4304359 ~ 4305446 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGCGTCTAGCTCCTTTTGTTTCTTCTCGAACGTCTCGTCATCGTCCTTGTCCTTCTCAAACTCTTTCTGGCAGCGATTCAGCAGAAGCTTTCGGAAATTCACCGTCACTCCCGGCTTATCAGAGGTAGGCACTTTCAACtgcacagagagatagacagagagagagagagagagagagagagagaaaattctCAAATGAATGCACGCAGTGGCATTTAATCTCAGATTCAGAATATGAAGCCGTGTCTGAtgcataaagacacacacacagacacgcacacagacacgcgcacgcacgcacgcacacagacacacgcacacacaagcacacccACCCCCATGAGGCAGCGGCACATGTTAGCGTAAGCGACAGAGAAGTTGGGCTCTGAGATGGCCTTCTCGAACACCAGGTCGATCACGCCCTTCAGCCTCTCCTCTGTGTCGATGGTCATCTCTGTGATCTGCTTCATCAGCGGCTGGAACATCTGGGGGGTCAGTTTGTTCAGCACGCCTCGCACACGCCGCAACAGCTCCTGCGTCTTCACTGATTCCGGGTCATCGACGTCGCCTCCGCCCCCACGCCGCCACGCCTTCTCGGCCTTGCTCAGCTGAATATCGTCATTCAGGGACACGCCGGACAGCACGATCTTCCTCGGTTCCTTACGGGATCCGGACTGACCCGAGCGCCTCGGGCCGGGCAAACCCACagccATGGGCCATTCGTCAATTCTGCACAAGTGTCATGCTACATGTTGTTGTGAAGCTGTGATTGGTAGACAGACTGACCGGGCCACGCCCCCCGACTGGCTGTCTGCCCAGGTTAGCAAATGAGGGGGTGAAATCTGGACCACAGTTCATTCTGCTCAGGTCTAACGGCCGCAGAGGAGTTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260851 lncRNA downstream 21899 4281004 ~ 4282460 (-) True G220278
XR_004579541.1 lncRNA downstream 478618 3821225 ~ 3825741 (-) True LOC113544520
TU260463 lncRNA downstream 497245 3727377 ~ 3807114 (-) False igsf11
TU260371 lncRNA downstream 715843 3588212 ~ 3588516 (-) True G219836
XR_004579533.1 lncRNA downstream 783872 3348363 ~ 3520487 (-) True LOC117599091
TU260836 lncRNA upstream 9420 4314866 ~ 4317621 (-) True G220266
TU260838 lncRNA upstream 83826 4389272 ~ 4392236 (-) True G220267
TU260946 lncRNA upstream 258274 4563720 ~ 4564128 (-) True G220359
TU260949 lncRNA upstream 283898 4589344 ~ 4589553 (-) True G220362
TU261237 lncRNA upstream 310836 4616282 ~ 4616632 (-) True G220621
XM_034310858.1 mRNA downstream 35312 4259163 ~ 4269047 (-) True LOC117599095
XM_026943293.2 mRNA downstream 232017 3920788 ~ 4072342 (-) False lrfn1
XM_026943334.2 mRNA upstream 12545 4317991 ~ 4336896 (-) True LOC113544495
XM_026943335.2 mRNA upstream 12897 4318343 ~ 4336897 (-) False LOC113544495
XM_026943336.2 mRNA upstream 12897 4318343 ~ 4336897 (-) False LOC113544495
XM_034310535.1 mRNA upstream 14706 4320152 ~ 4336898 (-) False LOC113544495
XM_034310534.1 mRNA upstream 14706 4320152 ~ 4336898 (-) False LOC113544495
TU260468 other downstream 487572 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other downstream 487572 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other downstream 487572 3811560 ~ 3816787 (-) False LOC113544484
TU260175 other downstream 1393194 2907326 ~ 2911165 (-) True G219651
TU261666 other upstream 1404652 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 1492539 5797985 ~ 5803878 (-) False LOC113532612
TU261846 other upstream 1715774 6021220 ~ 6024311 (-) False dynll2a
trnap-cgg_8 other upstream 2890077 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 3086969 7392415 ~ 7463499 (-) True zgc:77784

Expression Profile