RNA id: XM_026943551.2


Basic Information

Item Value
RNA id XM_026943551.2
length 5830
RNA type mRNA
GC content 0.50
exon number 35
gene id LOC113544632
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 4897950 ~ 4971519 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacaaacacaatgcacACATACAGGCACCTCTGAGAGAATTGAAACAGCAAggctatttttttgtttttgctatacactgaagacattttggtttgacagcaaaagatgaatatgcCCGATGCTTGTGCAGTGACTCTGGTGGAGTTTCCCTTAGACAGCTTCTCTCCCATAGACGGCTCTCTGGTCTTCAgATGATTATCTTCAGATGATGACCTAAACTCGTCCTTGCTGAAACAGAGACTCTGTGTGTTGTACAGCATTATTTGGAGGCCATGTTGTCTCCCACAGCAGAAGGCTTGCAGTCTGTTCACGAGTGGCTCGGGGGGCTCCGCCTTGATCAGTACAGTCCGGCCTTCCAGGAGGTGGGTCTAGGAACTGTTTGGGAATGCCGGGAGCTGACTGCCTGTCAACTGGAGCACATGGGTGTGGCTTTGCCGGGCCACCAGAAACGCATTCTGGGGAGCCTTCAGAAGCTCTTTGCGTCAGAACGAGGGCTTagtggagaggaagaggaggaggggtATAGGCCTATTCCAAGGGAAAGGACGAAATTCCGTGCTTCTGCAGGGACTGACTCGGAGGTGAACTGCTCACAAACCGTTGAACCACAAGATCAGAAACCAAACCTTCCCACTAATAATTCTGTGACTCACAAGAAAGGTCCGCCTCCAATCCCGCCTCGGGCGACTCAGAATTGTCCTCCGGTACCATTCTCAACTGTTTCTGTTACAGCAGCGATGACCACCGGGGACGTGTCTGTGACTCCTAGCAATCTTGCATCTGTATCTTTGACCAAGGCAACTCAGCTGAGACCCGTGCCCACTCCAGTTCCTGTTCCAGTTCGGCCCCAGCCACGAAACTTGCCTCTTGCTCCGAGGCGGCAAACTGGAGATAGGAAGCCATCACCCGTCTCGCCATCACCCGTCTCGCCATCACCCGTCTCGCCATCACCCGTCTCTCCTTCCTgttcttcctcatcatcatcatcatcatcaacagaACAGTTCCACCTGTATGAACAGTGTTCTTCACCGGGTCATGCTGAATTGGGTgttcctcctctccctccaaAGTCATATGCTGTAATGACCCCTAGAGAGCCTAAAGTCACCCCGCCTGCAAGACCCCCCCGGAGACCACCCATACCCCCCCGCACCACCACAGCAGCCACCAGTAAAACTACTGTGCTGCCCCGGAGCCCGACAGCGCTGAGCTCGTCTCCAGCAGATGATCTGTGTGGTCTCGACGTCACGGCCCAAATAAAAACTTGTGTAGAAACTTCTCAGCTAGCGTCTGTGTTAGCACCCTGTCAGAGACggttgGACTCCACAGGCAGTTCAGACAGCTATGAGGAGCTTGACATGGCAAAGTGTGCAGACAGTGATCGTATAGAAATGGCAgataagAACATGTTTCTGCCACTTCCCCGTGTCCGTAAGTCTCGGCGCAGCAGCCTGTACAGTGATGATGAGCTCCTGGATGAGGACGATGAGTCCGTGACGGAAAAGCGGCACTCGTGGATCGAGGATTACAGCCGACTCTCCGGCAGCCAGAACAGCATCTACCTGCCCACCACAGGACGAGTGTTAGCTCCGCCCCCCAGGGAAGACTCCAGCCCCCAACTCAGTCCAGTCATCAAGATGGGCTGGCTGGACAAGAACCCTCCACAGGGGTCCCTGATCTATCAGCGGCGTTGGGTCAAACTGGACGCTGATTACCTGCGCTACTTCGACAATGACAAGgATGTCTATTCGAAGCGGATCATACCAACATCCTCCATCACGACAGTGACCAGTGTGGGAGATCAGAAGTTTGAGGTGGTCACTCATAATCGCACCTTCCTGTTCCGGGCCGAGAGCGACTtGGAGAGGAATGATTGGGTGTCCGTGCtacaggagatcatcagttcaTCTCGCCTGAAGCCGAGTTCTGAGTTGACCCTTAACCCCTGTGTGACCTCAGAGATGAAAGGTTACCTGGAGCTCCGGGGCCTGCGCTCTAAACTCTACACCATAGTGTGTGGAGACAAAGTGTTCCTTTACAAAAATGCTGagGACTATAAGCTGGGTATTGGGATCACGGCTATAGATATGAATGTGGGGAATGTGAAGGACATGGACAGAAGAGCATTTGACCTTACCACGCCTTACCGCATATTCAGTTTTGTGGCAGAAACCGACCAGCTGAAGGACCAGTGGGTGGAGGCGATGAGGAACTCCATTGCAGAGGCTCTGTCTAACTATGAGGTTGCGGAGAAGATATGGGCGgagccagccaatcagaaatgtgCTGACTGTAGTGCCACCAAACCTGAGTGGGCAGCTATTAATCTGGGCGTGGTCTTCTGCAAGCGTTGTGCAGGAGAACACCGCAGTCTTGGTCCAAGCATATCAAAAGTACGGAGCCTCAAAATGGACAGAAAGGTGTGGACTGATGATTTAATCCAGCTCTTCCTGGAGCTAGGCAATGAGCGAGCCAATCAGTTTTGGGCAGCTAACATCCCACCCAGCGAGGCCCTGACTCCGCACAGCAGCAGCGACGAGCGCCGGCGTTTTATCACAGCTAAATACCGCGAGGGCAAATATCGCCGCTACCACCCGCTGTTCGGCAACCAGAAAGAGCTCGACAACgcattgtgtattaatgtgcagtctaatgatgtgtgtgagactctCGCCCTTGTCTTTTGTGGTGCTGATGTGAACTGTGACACAGGTATCCCAGAATTCCCTACTCCTGCCGCCTTGGCCCTGCACCACGGCCAGAGGCTGCAGGTGGAGTTCCTCACTCAGAACCGCAACATAGAGATTccgaggtcagaggtcaaactTGCCATGCACACAGAGCACTACATGGCCCCGCCTTCCATCACACACAACGGCTTCCTTTTTAAGACGGCCTCTATGGCTCGTCCAATCACAGAGCGCAAGAATAAAGAAGagtTCAGTAGGAGGTGGTGTGTGCTGAATGATggacattttaattattatgaaaGTGATAAGAACGCAACACCAAACGGAGGACTGAAGATGAAAGAGATTGTCTGTCTGGCTGTCAATCCTCCTGAGACACACGGgtaTGATCACTCGTTTGAGATTTACTCAGATGCAGAGCGTCTCTACCTGTTTGGGACGGACAATCCCGACTCCATGAAGGAATGGGTCAAGTCCATCGCCAAGTCATTCATCCCAGCGTGTGCTGAAGACCTGCTGCAGAAGGATTTTGAGCGGATTGGGCGTCTGCGCTATAAAGACCCTCTGAACCTGGAGAGCTGGAGGTTGGGCTGGTTCTGCCTCGAGGCATCTACGCTGCACGTGCGTTTGGAGGACAGTCAGAGCCACGAGAGCATCCAGCTGCAGAAACTTCTTGAACTCTCGAGGGATAATGAAGTTCTGGTGCTTGTGGAGCGGGGCAGAACGCTGTACATCGAGGGAGAGAGGAAGTTGGATTTTCATGGCTGGGCGTCGGCCATCCAGAGGGCTGCTGGGAGTTCAGGAGATACACTGAGTCAGCAGCAGCTCACTGAGGCAGATATACCGCTCATAGTGGAGCGCTGTATACATTACGTCACGCAGTACGGCCTCACGTCAGAAGGTATTTATCGTAAGAGTGGTGTGAACAGTAAGATCGCCTCCCTGCTGGATGCCTTCAGGAACGACGCTCGCTCTGTGTGGCTTAAAGAGGGAGAGCACCAAGTGGACGACGTGTCCAACGTCCTCAAGAGGTTCTTCAGGGACATCGAGGAGGGACTGTTCGGTCTGCAATCACACAACTGGCTCAGCACTacggctctcTCAGATGAAAGCGGGAAGATCTCTCAGTATCAGCTTCTTTTTGAAAATCTGCCTCGAGTTAACAAAGCCACACTACGCACACTGGTCAATCACTTATTCTGcgtgcaGCGGTTTTCAGAACTGAACCATATGAACCTCCATAACCTGGCAATAGTTTTCGGGCCGACGCTTTTCCAGACAGACGGTCAAGACTACAACGCAGGGCGCGTGGTGGAGGACCTCATACAGCACTACATCACCATTTTcagcgttaaTGAACAACAGTTAAAGAGACAGCTTGATGAAATCACCTACATCATTAAGTTACGAGAAAACTTCAACCCTAAAACAGGaccgGCCAGTGGAGATTTTATCTGCACAGTGTATCTGGAGGAAAAGAAGGAGACAGCTGAGCAGCACGTGAAGATCCCGGCCACGATGACGGCGGCTGAGCTGGCTTTCGAGATCCTGGACCGCAGGAAGATCAGCATCAAGGAGAAGGACTACTGGTGCTGCTTTGAGGTCAATGAGAAAGAAGAGATGGaGCGTCCTTTGCACTATCAGGAGAGGGTGTTGCCAATCCTGCACAGTTTAGggacagacagtaacctgcTCATCAAAAAGCACTATGCCATGGAGGCCATGCTCATCTAcctggCCAGTAAAGTTGATGTGACTAAACATGGCATGCTGAAGTTTAAAGAGGAGCGGAGTCTGCTGGGTCTGAGTACAGGAAGCTTCAATGATCGATACTTCATGCTCAACCAGACCTCACTACGACTCTACAAAGACGTccggAATCTGCAGAAGCGTCAGAATCAGgagctgctgtgtAGTAATCGGGCAGAGAAGGAATGGCCTGTGAAGTGTCTGAAAGTCTATCAGGGGATAAAGAAGAAGCTCCGCCCACCAACATGTTGGGGTCTGACTGTGGTGTATGAAAGTGAGAAGCATGAGAAGCAAGACAAACAGCAGTGgtATCTGTGCTGTGACACTCAGACAGAGATGAGGGAGTGGCTCGCTACGTTTCTCAGTATACAGcATGCGGGTCTCCTGTGGCCGGCGGAGTGGTCGAAGTCGCGTCCTGTCCCTCGTTCCTCTCCTCCGCTGGACTCTCGTCTCGGTAGCGTGTCGCTAATTCCTCTGCGTGGTACTGAGAGTGAGATGAGGAACAGCGTAGCTGCTTTCTCCGCCGATCCCCTCGCCCTCTTAAGAAATCTATGATCACGAAGTGACAATGTCTGAGAAGATGAAGAATATTCCAGAACGCATGAACCAATCAGACCAGCTGGGTTCAACGTGGTCTTAACGTGCTAGATGGATATGGTTATATGTTGATCCCTCACGTCATCTTCTGGAAAGTTCTCCCAGCTGTTTTTAGACTTTGTAGACTTTAAACCCAGAGCCCTTCCTTCATGTCACTTCCTGCAGCTGCACTGTTGGACAGCCAATCACAAGTCCTTCTGGAAAGTTCTTCTGGATATTGTAAGTGTTTGTCAGACAAATGTGAAGTTCTGAGAAGGTTTTCTGGATCAGTAAAGCGTGGACTGTGGACCGCATcatgctgtgtgtgagagagagcgagcagcTATTGCACCGCTTTTAACTTTAATCACGTTTAACTCTGCAGTCTGGACACAGTTCTACTGAAGTTAgtttaatacagaataaaacactcgatAGCTGCAGGTGAAAGGAATGCTGTTAGGAATTATTAACATCttattaacatacacacactctctctctttccttctctctctctctcttttctggtAGTACTGTCTCTCCAGATTAACCTTctgattattaaattatttattttaatttttctttgttctggTTGACTTTCGTTCACAACCATTTCATAAAATCATGTTCTGAGAAATTGTGTGTCGTACATTTGTACTTAAATCAGATTTTTGTCTTTCACATTCCTACACTTTCGTTTCCTTTATatgtttgtattgtattgtaccggactgttacagaaaatgtaatTAGTTATAATGAATGTACATTGATTGaattaaaagttattatttagTCTCAGTaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261319 lncRNA downstream 8737 4888864 ~ 4889213 (-) True G220694
TU261318 lncRNA downstream 9504 4887906 ~ 4888446 (-) True G220693
TU261315 lncRNA downstream 14510 4875644 ~ 4883440 (-) True G220690
TU261237 lncRNA downstream 281318 4616282 ~ 4616632 (-) True G220621
TU260949 lncRNA downstream 308397 4589344 ~ 4589553 (-) True G220362
XR_004579502.1 lncRNA upstream 42095 5013148 ~ 5014943 (-) True LOC117599070
TU261468 lncRNA upstream 371016 5342069 ~ 5342566 (-) True G220816
XR_004579477.1 lncRNA upstream 378627 5349680 ~ 5353368 (-) True LOC117599045
TU261474 lncRNA upstream 433028 5404081 ~ 5404283 (-) True G220822
TU261478 lncRNA upstream 445732 5416785 ~ 5416995 (-) True G220826
XM_026943406.2 mRNA downstream 39543 4685721 ~ 4858407 (-) True LOC113544562
XM_034310565.1 mRNA downstream 39906 4685722 ~ 4858044 (-) False LOC113544562
XM_026943409.2 mRNA downstream 84119 4685722 ~ 4813831 (-) False LOC113544562
XM_026943411.2 mRNA downstream 84156 4685722 ~ 4813794 (-) False LOC113544562
XM_026943408.2 mRNA downstream 87231 4685722 ~ 4810719 (-) False LOC113544562
XM_026943313.2 mRNA upstream 7880 4978933 ~ 4988249 (-) True stard10
XM_026943501.2 mRNA upstream 83863 5054916 ~ 5091599 (-) True inppl1a
XM_026943504.2 mRNA upstream 123790 5094843 ~ 5098990 (-) True folr
XM_026943570.2 mRNA upstream 139615 5110668 ~ 5113955 (-) True tomt
XM_026943386.2 mRNA upstream 166250 5137303 ~ 5142967 (-) True kbtbd3
TU260468 other downstream 1081163 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other downstream 1081163 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other downstream 1081163 3811560 ~ 3816787 (-) False LOC113544484
TU260175 other downstream 1986785 2907326 ~ 2911165 (-) True G219651
TU261666 other upstream 739045 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 826932 5797985 ~ 5803878 (-) False LOC113532612
TU261846 other upstream 1050167 6021220 ~ 6024311 (-) False dynll2a
trnap-cgg_8 other upstream 2224470 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 2421362 7392415 ~ 7463499 (-) True zgc:77784

Expression Profile