RNA id: XM_034310892.1


Basic Information

Item Value
RNA id XM_034310892.1
length 3216
RNA type mRNA
GC content 0.44
exon number 7
gene id nectin3a
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5550419 ~ 5599375 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGACAAGCTTACCGGACTCAGAAATCATGGCAAGGGGACTATCGGTTTATCGCGGGGATATTGCGGGGATATCTTTGGAACTGTCCAttcatcttcctcttcttttattcatcttcatcgtgttgccacatgattggctgactggataattgcatgaatgagcaggtgtccTACTAATCTGATTGGTGTTTGCAGCAACAAGGTTGTGGTTCCAGAGCATATTCAAGTTGTGCTTGGTAAGAATGCCACGCTGAGCTGCAGGGTGCACGTGGGTGCCAACCTCAGCTTGACACAAAGCTCCTGGGAACGCAACTTGCCCATGGGCTCTCTCACAGTGGCAGTATTCAATCCACAGTTCGGCATCTCCATATCTGAGAAGTACATAAATCGCGTCCATTTTCTCAACCCATCAGTAGAGGATGCCTCTATTGTGTTGGAGGGAGTAGGCTTTGCAGATATTGGCTCCTATATTTGCAAGGTGGTCACCTTCCCACTGGGTAACTCACAGGCCTCTACAGTCATTGACATCATGGttgAACCCAAAGTATATGTGTTGGCGGGTCCTGATCCTCTGGTGGATGGTAATGTGGAGGGTGTGGTGGCAACATGCATGGCTGAAAGGGCCCGTCCCCCGGCTGATGTCTTCTGGGAGGCGGAGCTTTACGGACGCTCAGAGCAGATCATTCAGGATGAACCTGATGGCACCACCTCCACGCAGGTGGACTACATCTGGGCACCCAGTAGCCATGCCCTTAACCACACCCTCACCTGTGTGGTACGCCACCCTGCCCTGGCTATGGACTTGCGCATCCCCTATGTGCTGAACATACAATTTGCTCCAGATGTCATGGTTGAAGTCCAGAATGATGTTTGGTATGTGGGACAAGAAAATGCAAAGTTGGACTGCAGAGCAAATGCcaatcctcctcctcatcacttCTTCTGGACCAGGATCAACATGCAGATGCCTGCAGGAGTTAAGATGACAAACAGCAGTCTGGTCTTCACTCGTCCTCTGCAGAGAAATGATTCTGGAACGTATAGATGTGAGGTCCAGAACAAGGTTGGACTACATTCTCAGGAGGTACACATCTGGATACATGAGCCTCCGTCTATGCCTTCTGTCCCTGCCACTACCACTGGAGTCATTCCTGGCCTTTATAGCTCAACACCCACCCACTTCCGTGCCCACTTCACCTCCCCAACGCTGGCATCACTGCATGATGATACGATGGGCAGTGTGTTGGGCAGTGCCATAGGAGGCACACTTGTACTGGTTCTTCTGCTGGGTATTGCTTTGCTGTGGTACACCCGTCAGCAGCGTACATTCCGTGGTGATTACTACACCAAGCAGTACATTGGGCCCTCATATATGCAGAAAGAGTCCATTGAGCTTCATGACACCTTTAGAGATGACTTGGCTAATAGCAGCCAAGACCTGAAACACAAACTTAATGGTGATATACCTGATACACAGATATACCACAGttacagaaaaaacaaaggCTGCTGGGTGAGTTATTGCCCTGAAAACTCTAACATTAACACAACTGGGAACACCAGCACCCCCTACCTGCAAGAGAAGAGGTACAATATGGCCACAGACTGTGACTATGTGTCTCACAAGGACGGATCTGTTATCTCTCGTAGAGAATggtatgtgtaaatatgtgagATGGTTAATGGGAGACAAGATTTTACAGAATACAGTATTCGcaaactcttaaaataaaggaaagatttttaaaatgtatatcagGCATATTAAAGGCTGTATTATTTTCTAGCTATTACCTCTAGGTGGTTGATATTGCACAGCAAAtgtctgtgttgttttgtgctTTTAATCCCAAGAGAGATCAAAGGGTAGCCTGAAGCAATGAAAACAAGTTGGAATACTGTATATTGCCTCCTCTTTCCTGTGCCCTTGTTTAAAATTTCTGATTCAGTTTTAGTTACTTAGAGATTCTTATGTTTTGCGTAACAAATACAATGAAAAGTAATTACATTGTATTGTTTGTATGTTCTAACAGTCTGAATAATTTTTCCATTGTTCATATTATTGCAAAAAATTGCATCGTTTGTAGTTTCCCTGGACTGTAAAGATAATGAAAAACATCACAGATTTAAAGTGAAAATCTACATATCGCACTCTTGTTTAAGTACACATATACTTTCTCTGTTTTAACTTCTTGTGTTTTCAATTTTTAAGAATTAGTGGGTATAATATGGAAAAACTTAATGAATGAGTTCCTCAGCACTTGATGTGTGTTTTAAGTTTAGATGATGAAATGGAAGGTTGCATAAACTCTAGTAATGCTAAACAATTGGGTCTAAAGATAGCGTGGTTCCTCAAACTGTCCAGTTCAGGAGGCGATAATGTAGTGCCTCCTGAGCCTTAGTACCAATCAGCTGCACAGGTACTGGTGGCAGGTGGCACAGAGTGTTTTTTGCCAAGCTCTGGCCAACTTGCCTTCTCATCTGCATGAACAATACTGGTGATCTACCGCATACTGCCTGTAAGAATTCTGTACCTATTGTACTTGCAGTTTCGGGCATTTAGTGGCCAGTAGAATCTGTGCCACCATGTTTGAGATACAATGCACATTTTTCATAGCCTCATACAGTTTGTAAATCACCATGTCAGCTCCTTTATATTCAGCTGCATGCAGCACTGATTAACGTGCAGGGCTTCATCAGCCTGAACCATTACTGAGTCCACTGGTGTCTCTACCGTACATGTTATCAACCTTCTCAGTACTTCTATATCTGTCACTGCAGCCAGTATATATGCTTTTTTCTCTGGCTGCAGCTTCAGTGTGCTTACTTACTTCAGATATATGGTGGGATATCCCAGTCATTCACTTTGCTGAATATTCCATGAAATGGGTTAGGCATTCAATCAGCTGTGTTAAATGGATGATCCATGTTCATTAATATCAGACTACAGCACATTCGCTGCTGCTGAGCTGAACTTCTCCATTATGTTCTGATCATAAGAATGCTTCAGTGGGGGGCTATCAGCACTCTCCTCCAGGGTGGCATCATTAGAGAAGCTGCAGCTAAATTgcagccttaggactgcaaattgctaagaacagttgaCACTGAAGTTGCCATCATAACATTGAATTATTTGAAcagactttaagttaaaacaataatgaattcagaaatgactctgatgctcataagctcataagttcctgttaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261547 lncRNA downstream 64276 5503040 ~ 5503942 (-) True G220884
TU261527 lncRNA downstream 79210 5488775 ~ 5489008 (-) True G220864
TU261521 lncRNA downstream 113295 5454596 ~ 5454923 (-) True G220858
TU261494 lncRNA downstream 124516 5443492 ~ 5443702 (-) True G220834
TU261478 lncRNA downstream 151223 5416785 ~ 5416995 (-) True G220826
TU261709 lncRNA upstream 195892 5795128 ~ 5795453 (-) True G221026
TU261757 lncRNA upstream 271165 5870401 ~ 5870627 (-) True G221068
TU261950 lncRNA upstream 492677 6091913 ~ 6092434 (-) True G221214
TU261982 lncRNA upstream 603828 6203064 ~ 6204930 (-) True G221245
TU262213 lncRNA upstream 726855 6326091 ~ 6416808 (-) True G221450
XM_026923908.2 mRNA downstream 19171 5536198 ~ 5549047 (-) True si:ch211-149e23.4
XM_034310860.1 mRNA downstream 79974 5451275 ~ 5488244 (-) True LOC113532491
XM_026924418.2 mRNA downstream 164900 5393818 ~ 5403318 (-) True LOC113532789
XM_026943386.2 mRNA downstream 425251 5137303 ~ 5142967 (-) True kbtbd3
XM_026943570.2 mRNA downstream 454263 5110668 ~ 5113955 (-) True tomt
XM_026924552.2 mRNA upstream 7468 5606704 ~ 5609015 (-) True diabloa
XM_026924516.1 mRNA upstream 22270 5621506 ~ 5622471 (-) True LOC113532847
XM_026924970.2 mRNA upstream 133499 5732735 ~ 5743421 (-) True ywhag2
XM_034310516.1 mRNA upstream 169391 5768627 ~ 5772520 (-) True proca1
XM_026924672.2 mRNA upstream 169391 5768627 ~ 5772509 (-) False proca1
TU260468 other downstream 1751431 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other downstream 1751431 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other downstream 1751431 3811560 ~ 3816787 (-) False LOC113544484
TU260175 other downstream 2657053 2907326 ~ 2911165 (-) True G219651
TU261666 other upstream 110862 5710098 ~ 5710891 (-) True G220990
TU261738 other upstream 198749 5797985 ~ 5803878 (-) False LOC113532612
TU261846 other upstream 421984 6021220 ~ 6024311 (-) False dynll2a
trnap-cgg_8 other upstream 1596287 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 1793179 7392415 ~ 7463499 (-) True zgc:77784

Expression Profile