RNA id: TU261738


Basic Information

Item Value
RNA id TU261738
length 2487
RNA type TUCP
GC content 0.41
exon number 4
gene id LOC113532612
representative False

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5797928 ~ 5803973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTCACACCACTCAGCCTGCAGGAGCTGCAGCAGCACAAGTCTTCTCAGCACAAGGGAGGGGAATAATGCACAGAATTAAGACTCCCTCACTGCCTCAGGGAGCTGAGAAATGCAAGACAATGTGTGACGGCTAATAAAGAATACAAAGAGGGGCAAGAAAGACCAAACAGTGAAGGGATAGCCTTAGGAAGCCCAGAGCACACCACAGGGGACGTTACGAAGGAAGGCGGGAGAAGATGGATGGAATATTTTTAATGGTGGATCAGAACCCTGTTTTCTCTGTGTTGTTGTTCTCACTCATGTTCAGGGTGGTCCATCACCTCCTGAGGAAGCTGCCCCTGCCTAAAGTAGTAGAGCATGATGAGCTTCGCTCCTGGAAGTGGAGAAACCTCAGTGTGTCTCTGGTCCATTCACTGCTCACCGGCCCATGGGCCATCACCTGTGTGAGCCTATGGCCAGAGACGCTGAGGAACATGCACTCTTTCTCCACACCAGTCTGCTACCTGCTTGTGAGTGTTTCAGCAGGTTACTTTGTGCAAGATGCCGGTGACATCATATTTTCAGGCCATGCCCTAGGATCATGGGAGTTCCTGCTCCATCACTTCTTGGTGCCCAGTTTTACATAACCTATTATATCATCATCAACTTCTCCTTGCTGCAACATGGCAGCTACTTCCTGCTCACCGTGCTCCTCATGGATACCATGATCCTCATCTACTTCTACCGATTGCTCAGGGCTGACTTTTGCCCCAGAGGGAAGGGCCACGTCATACAGAATGGCGCTCACCGCAGCAGCTCCTCTCAGCTCTTTGATGACTGATCAGACCTTGGAAGATGAATAAAAACCCGACTGTCTACTTCATTACCCTCAGTTTAAGACTGTGTTTTCACCTGGTCATTTCAGTGTCTTGTATCTGGGCCGTATCCTGATAAGAATCGTATGAATTTATACCTGTAGTAAAGGCGTCTTGACATGCATTAGCCAGGCTGAAATCTGATTTCAGtattacacattaatatacTATGAATTAATCAGCTCATTACATTCTACTTCCTGTAGTATTCCTTGTTTTTAGTTCTTTTATGCAAAAGAGGGTTACTGCATCAAAAATCAAGATGTGTGCATTCAAACATTTGGCTTGGGgagatgaatacatttacaCTTATATAACAGGTAGCTAAAACATGTTTCATACATCCTTTTGATGTGGTTTGAGTAattagatataaataaattttaaaagcGTCCTGAGTGCAAttacacatgcatttttttgtggATAATCTCCATCCAGATATAATCCTCATATTCAAGACGCATGAAACAACCAAGTGTAATAAAAGTCTTAATTTAATGGTTTTGTGTAGCCCAGTTCACTGGGACATGTGTTTACCCTGAAAATCTATGACTGCCTCTCTCTGCCTTCTCTCAAGAGCTCCTCAAGAATCTCACTGCCTCCTGTGTTTGTACAATTGTGATTAATGTCTAATGGGGTGTGGGTAAGCTATATGGCCTTCACTGTCAGGCCTTGTGGACCAACTTCATGGTtgtaaacaaaacaagcaaTAATGTAGCATTGAATGGCAGACACTTTTAAAGAATCTTGTTATACCGTAGATAATGTTCACCTTTTTGAGATGGAAGTTTGTAATTCATATTTACAGTCATAATAGACATAACAGTACATGTCTGCTAATCTCCAGGCTGGAAATCTAAACTGTCTATGTGTCATTTGATTACTTTGGCTGTGCTTTAAAAATACACTTCACATagaaaaagtgacatttttataTGAAGCAGCCCCCATGTCCTAGCTTTTTGACAACTGATTGATTAAACTCCTCAAACACAATCAAATAACAAAGCGAATTAATTCAAACTGGTAAATAGTGGTGAATGAAAATTTCTTTTATGAGAGAAGCTGTGGCTTTGTTGATATAATTGAAGAGCTAGATACAGTTAGACAGCTAATAGCTAGACTGGACAACTAAAGTAGCTAGATATCCATGGGCCATTTGTGAGTGCTaccattttaaataacatgctGACGGTCCTCAAACAACAAAGCCTGTCCAAacaatgttttcttattttcaagTATTAAAAGCACATAGGCTGTGTAGTCAGTAGAGCTGCAAAGTATTACAAACTGAAGGAATGATGCAGTGGTGTGCTGTGTTGCAGTGTTCTGGTTTTTTTGCATgtacaaaagcacaaaaagatGATTTTGAAAGATTACCATGTACATATACCTTACTCATTCCTTACCTTATTTATTGCAGCTTGTGGAAGTATTTCTTCCAGGCTATGGGGGTCTGTGAATTCATTAAGTCACCATTTGAAGATCTGCACTGAGaagttattctttttttttcttctttactgCAGATCGGAACTGTGACTTAAACATAAAGGGTTAGAGTCAAATGAGCCTTATGATGAGTGAAGACTTTGAACAGGCCTTTAGACTTCAGAGTGTGAAcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261709 lncRNA downstream 2532 5795128 ~ 5795453 (-) True G221026
TU261600 lncRNA downstream 198610 5588282 ~ 5599375 (-) False nectin3a
TU261547 lncRNA downstream 294043 5503040 ~ 5503942 (-) True G220884
TU261527 lncRNA downstream 308977 5488775 ~ 5489008 (-) True G220864
TU261521 lncRNA downstream 343062 5454596 ~ 5454923 (-) True G220858
TU261757 lncRNA upstream 66523 5870401 ~ 5870627 (-) True G221068
TU261950 lncRNA upstream 288035 6091913 ~ 6092434 (-) True G221214
TU261982 lncRNA upstream 399186 6203064 ~ 6204930 (-) True G221245
TU262213 lncRNA upstream 522213 6326091 ~ 6416808 (-) True G221450
TU262227 lncRNA upstream 613004 6416882 ~ 6417625 (-) True G221461
XM_026924574.2 mRNA downstream 1010 5787013 ~ 5796975 (-) False rab34a
XM_026924575.2 mRNA downstream 1235 5787013 ~ 5796750 (-) False rab34a
XM_026924577.2 mRNA downstream 1262 5787013 ~ 5796723 (-) False rab34a
XM_026924576.2 mRNA downstream 1270 5787013 ~ 5796715 (-) True rab34a
XM_034310516.1 mRNA downstream 25465 5768627 ~ 5772520 (-) True proca1
XM_034310538.1 mRNA upstream 135174 5939052 ~ 5975719 (-) True synrg
XM_026924653.2 mRNA upstream 185540 5989418 ~ 6003349 (-) True hnf1ba
XM_026923900.2 mRNA upstream 217267 6021145 ~ 6024353 (-) True dynll2a
XM_026924598.2 mRNA upstream 221585 6025463 ~ 6028603 (-) True srsf1a
XM_026924004.2 mRNA upstream 225368 6029246 ~ 6033511 (-) True aldoca
TU261666 other downstream 87094 5710098 ~ 5710891 (-) True G220990
TU260468 other downstream 1981198 3740282 ~ 3816787 (-) False LOC113544484
TU260466 other downstream 1981198 3811560 ~ 3816787 (-) False LOC113544484
TU260467 other downstream 1981198 3811560 ~ 3816787 (-) False LOC113544484
TU260175 other downstream 2886820 2907326 ~ 2911165 (-) True G219651
TU261846 other upstream 217342 6021220 ~ 6024311 (-) False dynll2a
trnap-cgg_8 other upstream 1391645 7195523 ~ 7195594 (-) True trnap-cgg_8
XR_004579456.1 other upstream 1588537 7392415 ~ 7463499 (-) True zgc:77784
TU263800 other upstream 3137140 8941018 ~ 8946899 (-) True G222809
TU264952 other upstream 4504182 10308060 ~ 10312487 (-) False LOC113533081

Expression Profile